POP-OUT | CLOSE

An Information Portal to 105339 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
2JGL
  •   Crystallization Hide
    Crystallization Experiments
    pH 7
    Details 28% PEG 750MME, 0.1 M HEPES PH7.0, pH 7.00
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 79.58 α = 90
    b = 111.49 β = 90
    c = 227.22 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARRESEARCH
    Details MIRRORS
    Collection Date 2005-03-28
     
    Diffraction Radiation
    Monochromator SI111
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type MAX II BEAMLINE I711
    Wavelength 1.0863
    Site MAX II
    Beamline I711
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2.6
    Resolution(Low) 20.77
    Number Reflections(Observed) 63074
    Percent Possible(Observed) 99.9
    R Merge I(Observed) 0.08
    Redundancy 6.6
     
    High Resolution Shell Details
    Resolution(High) 2.6
    Resolution(Low) 2.74
    Percent Possible(All) 100.0
    R Merge I(Observed) 0.43
    Mean I Over Sigma(Observed) 5.1
    Redundancy 6.6
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method OTHER
    reflnsShellList 2.6
    Resolution(Low) 20.44
    Number of Reflections(Observed) 61653
    Number of Reflections(R-Free) 1246
    Percent Reflections(Observed) 100.0
    R-Factor(Observed) 0.2
    R-Work 0.199
    R-Free 0.24
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 41.17
    Anisotropic B[1][1] 0.08
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.06
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.14
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6
    Shell Resolution(Low) 2.67
    Number of Reflections(R-Free) 101
    Number of Reflections(R-Work) 4446
    R-Factor(R-Work) 0.281
    R-Factor(R-Free) 0.309
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 2.783
    r_scbond_it 1.663
    r_mcangle_it 1.274
    r_mcbond_it 0.726
    r_nbd_refined 0.209
    r_gen_planes_refined 0.004
    r_chiral_restr 0.094
    r_dihedral_angle_4_deg 19.903
    r_dihedral_angle_3_deg 17.207
    r_dihedral_angle_2_deg 33.714
    r_dihedral_angle_1_deg 6.134
    r_angle_refined_deg 1.347
    r_bond_refined_d 0.012
    r_nbtor_refined 0.312
    r_xyhbond_nbd_refined 0.144
    r_symmetry_vdw_refined 0.138
    r_symmetry_hbond_refined 0.305
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 8344
    Nucleic Acid Atoms 0
    Heterogen Atoms 62
    Solvent Atoms 306
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) CCP4 (SCALA)
    Structure Solution CCP4
    Structure Refinement REFMAC 5.2.0019
     
    Software
    refinement REFMAC version: 5.2.0019
    model building CCP4