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X-RAY DIFFRACTION
Materials and Methods page
2JGJ
  •   Crystallization Hide
    Crystallization Experiments
    pH 7
    Details 28% PEG 750MME, 0.1 M HEPES PH7.0, pH 7.00
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 79.25 α = 90
    b = 111.2 β = 90
    c = 227.36 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARRESEARCH
    Details MIRRORS
    Collection Date 2006-04-04
     
    Diffraction Radiation
    Monochromator SI111
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type MAX II BEAMLINE I711
    Wavelength 1.07962
    Site MAX II
    Beamline I711
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2.5
    Resolution(Low) 29.7
    Number Reflections(Observed) 69923
    Percent Possible(Observed) 99.5
    R Merge I(Observed) 0.06
    Redundancy 7.4
     
    High Resolution Shell Details
    Resolution(High) 2.5
    Resolution(Low) 2.64
    Percent Possible(All) 99.3
    R Merge I(Observed) 0.37
    Mean I Over Sigma(Observed) 6.4
    Redundancy 7.5
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method OTHER
    reflnsShellList 2.5
    Resolution(Low) 19.98
    Number of Reflections(Observed) 68354
    Number of Reflections(R-Free) 1398
    Percent Reflections(Observed) 99.3
    R-Factor(Observed) 0.214
    R-Work 0.214
    R-Free 0.244
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 46.74
    Anisotropic B[1][1] 0.04
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.01
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.05
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5
    Shell Resolution(Low) 2.56
    Number of Reflections(R-Free) 107
    Number of Reflections(R-Work) 4926
    R-Factor(R-Work) 0.273
    R-Factor(R-Free) 0.292
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 2.586
    r_scbond_it 1.6
    r_mcangle_it 1.225
    r_mcbond_it 0.703
    r_nbd_refined 0.207
    r_gen_planes_refined 0.004
    r_chiral_restr 0.089
    r_dihedral_angle_4_deg 18.396
    r_dihedral_angle_3_deg 16.536
    r_dihedral_angle_2_deg 32.934
    r_dihedral_angle_1_deg 5.992
    r_angle_refined_deg 1.305
    r_bond_refined_d 0.011
    r_nbtor_refined 0.31
    r_xyhbond_nbd_refined 0.127
    r_symmetry_vdw_refined 0.16
    r_symmetry_hbond_refined 0.288
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 8374
    Nucleic Acid Atoms 0
    Heterogen Atoms 56
    Solvent Atoms 177
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) CCP4 (SCALA)
    Structure Solution CCP4
    Structure Refinement REFMAC 5.2.0019
     
    Software
    refinement REFMAC version: 5.2.0019
    model building CCP4