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X-RAY DIFFRACTION
Materials and Methods page
2JGE
  •   Crystallization Hide
    Crystallization Experiments
    pH 7
    Details 28% PEG 750MME, 0.1 M HEPES PH7.0, pH 7.00
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 79.66 α = 90
    b = 112.33 β = 90
    c = 226.52 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARRESEARCH
    Details MIRRORS
    Collection Date 2006-02-02
     
    Diffraction Radiation
    Monochromator SI111
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type MAX II BEAMLINE I711
    Wavelength 1.131
    Site MAX II
    Beamline I711
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2.6
    Resolution(Low) 20
    Number Reflections(Observed) 457871
    Percent Possible(Observed) 99.8
    R Merge I(Observed) 0.09
    Redundancy 7.2
     
    High Resolution Shell Details
    Resolution(High) 2.6
    Resolution(Low) 2.74
    Percent Possible(All) 100.0
    R Merge I(Observed) 0.56
    Mean I Over Sigma(Observed) 4.4
    Redundancy 7.3
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method OTHER
    reflnsShellList 2.6
    Resolution(Low) 19.69
    Number of Reflections(Observed) 61943
    Number of Reflections(R-Free) 1252
    Percent Reflections(Observed) 100.0
    R-Factor(Observed) 0.199
    R-Work 0.199
    R-Free 0.233
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 41.48
    Anisotropic B[1][1] 0.0
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.0
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.0
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6
    Shell Resolution(Low) 2.67
    Number of Reflections(R-Free) 96
    Number of Reflections(R-Work) 4450
    R-Factor(R-Work) 0.287
    R-Factor(R-Free) 0.281
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 2.676
    r_scbond_it 1.636
    r_mcangle_it 1.249
    r_mcbond_it 0.704
    r_nbd_refined 0.213
    r_gen_planes_refined 0.004
    r_chiral_restr 0.095
    r_dihedral_angle_4_deg 20.189
    r_dihedral_angle_3_deg 16.965
    r_dihedral_angle_2_deg 34.011
    r_dihedral_angle_1_deg 6.21
    r_angle_refined_deg 1.368
    r_bond_refined_d 0.011
    r_nbtor_refined 0.314
    r_xyhbond_nbd_refined 0.131
    r_symmetry_vdw_refined 0.211
    r_symmetry_hbond_refined 0.282
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 8370
    Nucleic Acid Atoms 0
    Heterogen Atoms 28
    Solvent Atoms 270
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) CCP4 (SCALA)
    Structure Solution CCP4
    Structure Refinement REFMAC 5.2.0019
     
    Software
    refinement REFMAC version: 5.2.0019
    model building CCP4