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X-RAY DIFFRACTION
Materials and Methods page
2JEY
  •   Crystallization Hide
    Crystallization Experiments
    pH 7
    Details 27-30 & PEG750MME, 0.1 M HEPES PH 7.0
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 76.67 α = 90
    b = 108.45 β = 90
    c = 220.62 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARRESEARCH
    Collection Date 2005-10-29
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type MAX II BEAMLINE I711
    Wavelength 1.082
    Site MAX II
    Beamline I711
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 2.7
    Resolution(Low) 29.88
    Number Reflections(Observed) 51435
    Percent Possible(Observed) 99.9
    R Merge I(Observed) 0.11
    Redundancy 6.6
     
    High Resolution Shell Details
    Resolution(High) 2.7
    Resolution(Low) 2.85
    Percent Possible(All) 100.0
    R Merge I(Observed) 0.49
    Mean I Over Sigma(Observed) 4.2
    Redundancy 6.6
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.7
    Resolution(Low) 29.88
    Number of Reflections(Observed) 50356
    Number of Reflections(R-Free) 1011
    Percent Reflections(Observed) 100.0
    R-Factor(Observed) 0.207
    R-Work 0.206
    R-Free 0.261
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 37.75
    Anisotropic B[1][1] 0.04
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.01
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.05
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.7
    Shell Resolution(Low) 2.77
    Number of Reflections(R-Free) 77
    Number of Reflections(R-Work) 3665
    R-Factor(R-Work) 0.295
    R-Factor(R-Free) 0.373
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 3.045
    r_scbond_it 1.842
    r_mcangle_it 1.288
    r_mcbond_it 0.724
    r_nbd_refined 0.253
    r_gen_planes_refined 0.006
    r_chiral_restr 0.114
    r_dihedral_angle_4_deg 20.254
    r_dihedral_angle_3_deg 19.363
    r_dihedral_angle_2_deg 33.623
    r_dihedral_angle_1_deg 7.065
    r_angle_refined_deg 1.601
    r_bond_refined_d 0.015
    r_nbtor_refined 0.334
    r_xyhbond_nbd_refined 0.167
    r_symmetry_vdw_refined 0.264
    r_symmetry_hbond_refined 0.268
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 8336
    Nucleic Acid Atoms 0
    Heterogen Atoms 67
    Solvent Atoms 162
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) XDS
    Data Reduction (data scaling) SCALA
    Structure Solution REFMAC
    Structure Refinement REFMAC 5.2.0019
     
    Software
    refinement REFMAC version: 5.2.0019
    model building REFMAC