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X-RAY DIFFRACTION
Materials and Methods page
2JDR
  •   Crystallization Hide
    Crystallization Experiments
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 44.93 α = 90
    b = 60.99 β = 90
    c = 124.96 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ESRF BEAMLINE ID29
    Wavelength 1.0000
    Site ESRF
    Beamline ID29
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.3
    Resolution(Low) 55
    Number Reflections(Observed) 14109
    Percent Possible(Observed) 95.0
    R Merge I(Observed) 0.08
    Redundancy 2.6
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method OTHER
    reflnsShellList 2.3
    Resolution(Low) 54.81
    Number of Reflections(Observed) 14109
    Number of Reflections(R-Free) 756
    Percent Reflections(Observed) 93.4
    R-Factor(Observed) 0.196
    R-Work 0.193
    R-Free 0.252
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 39.71
    Anisotropic B[1][1] -1.36
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -1.79
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 3.15
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.3
    Shell Resolution(Low) 2.36
    Number of Reflections(R-Free) 68
    Number of Reflections(R-Work) 1023
    R-Factor(R-Work) 0.23
    R-Factor(R-Free) 0.31
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 0.098
    r_scbond_it 0.078
    r_mcangle_it 0.077
    r_mcbond_it 0.056
    r_nbd_refined 0.206
    r_gen_planes_other 0.001
    r_gen_planes_refined 0.005
    r_chiral_restr 0.078
    r_dihedral_angle_4_deg 18.92
    r_dihedral_angle_3_deg 16.486
    r_dihedral_angle_2_deg 34.749
    r_dihedral_angle_1_deg 6.514
    r_angle_other_deg 0.871
    r_angle_refined_deg 1.382
    r_bond_other_d 0.001
    r_bond_refined_d 0.013
    r_nbd_other 0.201
    r_nbtor_refined 0.189
    r_nbtor_other 0.085
    r_xyhbond_nbd_refined 0.121
    r_symmetry_vdw_refined 0.215
    r_symmetry_vdw_other 0.293
    r_symmetry_hbond_refined 0.106
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2684
    Nucleic Acid Atoms 0
    Heterogen Atoms 30
    Solvent Atoms 105
     
     
  •   Software and Computing Hide
    Computing
    Structure Refinement REFMAC 5.2.0019F
     
    Software
    refinement REFMAC version: 5.2.0019F