X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 44.93 α = 90
b = 60.99 β = 90
c = 124.96 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
-- -- -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE ID29 -- ESRF ID29

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.3 55 95.0 0.08 -- -- 2.6 -- 14109 -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
OTHER 2.3 54.81 -- -- -- 14109 756 93.4 -- 0.196 0.193 0.252 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.3 2.36 -- 68 1023 0.23 0.31 -- --
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 39.71
Anisotropic B[1][1] -1.36
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -1.79
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 3.15
RMS Deviations
Key Refinement Restraint Deviation
r_scangle_it 0.098
r_scbond_it 0.078
r_mcangle_it 0.077
r_mcbond_it 0.056
r_nbd_refined 0.206
r_gen_planes_other 0.001
r_gen_planes_refined 0.005
r_chiral_restr 0.078
r_dihedral_angle_4_deg 18.92
r_dihedral_angle_3_deg 16.486
r_dihedral_angle_2_deg 34.749
r_dihedral_angle_1_deg 6.514
r_angle_other_deg 0.871
r_angle_refined_deg 1.382
r_bond_other_d 0.001
r_bond_refined_d 0.013
r_nbd_other 0.201
r_nbtor_refined 0.189
r_nbtor_other 0.085
r_xyhbond_nbd_refined 0.121
r_symmetry_vdw_refined 0.215
r_symmetry_vdw_other 0.293
r_symmetry_hbond_refined 0.106
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2684
Nucleic Acid Atoms 0
Heterogen Atoms 30
Solvent Atoms 105

Software

Computing
Computing Package Purpose
REFMAC 5.2.0019F Structure Refinement
Software
Software Name Purpose
REFMAC version: 5.2.0019F refinement