X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 45.26 α = 90
b = 60.7 β = 90
c = 132.57 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
-- -- -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE ID29 -- ESRF ID29

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.8 55 95.0 0.06 -- -- 2.7 -- 31145 -- 2.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
OTHER 1.8 55.19 -- -- -- 31145 1676 94.6 -- 0.177 0.175 0.21 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.8 1.85 -- 93 1764 0.205 0.27 -- 72.97
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 19.86
Anisotropic B[1][1] -0.06
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -1.22
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 1.28
RMS Deviations
Key Refinement Restraint Deviation
r_scangle_it 0.109
r_scbond_it 0.078
r_mcangle_it 0.09
r_mcbond_other 0.025
r_mcbond_it 0.061
r_nbd_refined 0.204
r_gen_planes_other 0.001
r_gen_planes_refined 0.004
r_chiral_restr 0.068
r_dihedral_angle_4_deg 15.971
r_dihedral_angle_3_deg 12.267
r_dihedral_angle_2_deg 34.008
r_dihedral_angle_1_deg 5.557
r_angle_other_deg 0.826
r_angle_refined_deg 1.096
r_bond_other_d 0.001
r_bond_refined_d 0.008
r_nbd_other 0.187
r_nbtor_refined 0.182
r_nbtor_other 0.08
r_xyhbond_nbd_refined 0.086
r_symmetry_vdw_refined 0.121
r_symmetry_vdw_other 0.283
r_symmetry_hbond_refined 0.123
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2666
Nucleic Acid Atoms 0
Heterogen Atoms 32
Solvent Atoms 323

Software

Computing
Computing Package Purpose
REFMAC 5.2.0019 Structure Refinement
Software
Software Name Purpose
REFMAC version: 5.2.0019 refinement