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X-RAY DIFFRACTION
Materials and Methods page
2JDO
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 45.26 α = 90
    b = 60.7 β = 90
    c = 132.57 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ESRF BEAMLINE ID29
    Wavelength 0.97620
    Site ESRF
    Beamline ID29
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 1.8
    Resolution(Low) 55
    Number Reflections(Observed) 31145
    Percent Possible(Observed) 95.0
    R Merge I(Observed) 0.06
    Redundancy 2.7
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method OTHER
    reflnsShellList 1.8
    Resolution(Low) 55.19
    Number of Reflections(Observed) 31145
    Number of Reflections(R-Free) 1676
    Percent Reflections(Observed) 94.6
    R-Factor(Observed) 0.177
    R-Work 0.175
    R-Free 0.21
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 19.86
    Anisotropic B[1][1] -0.06
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -1.22
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 1.28
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.8
    Shell Resolution(Low) 1.85
    Number of Reflections(R-Free) 93
    Number of Reflections(R-Work) 1764
    R-Factor(R-Work) 0.205
    R-Factor(R-Free) 0.27
    Percent Reflections(Observed) 72.97
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 0.109
    r_scbond_it 0.078
    r_mcangle_it 0.09
    r_mcbond_other 0.025
    r_mcbond_it 0.061
    r_nbd_refined 0.204
    r_gen_planes_other 0.001
    r_gen_planes_refined 0.004
    r_chiral_restr 0.068
    r_dihedral_angle_4_deg 15.971
    r_dihedral_angle_3_deg 12.267
    r_dihedral_angle_2_deg 34.008
    r_dihedral_angle_1_deg 5.557
    r_angle_other_deg 0.826
    r_angle_refined_deg 1.096
    r_bond_other_d 0.001
    r_bond_refined_d 0.008
    r_nbd_other 0.187
    r_nbtor_refined 0.182
    r_nbtor_other 0.08
    r_xyhbond_nbd_refined 0.086
    r_symmetry_vdw_refined 0.121
    r_symmetry_vdw_other 0.283
    r_symmetry_hbond_refined 0.123
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2666
    Nucleic Acid Atoms 0
    Heterogen Atoms 32
    Solvent Atoms 323
     
     
  •   Software and Computing Hide
    Computing
    Structure Refinement REFMAC 5.2.0019
     
    Software
    refinement REFMAC version: 5.2.0019