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X-RAY DIFFRACTION
Materials and Methods page
2JC1
  •   Crystallization Hide
    Crystallization Experiments
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 86.24 α = 90
    b = 106.26 β = 90
    c = 126.4 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector IMAGE PLATE
    Type RIGAKU
    Details MIRRORS
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source ROTATING ANODE
    Type RIGAKU RUH2R
    Wavelength 1.5418
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2
    Resolution(Low) 27.4
    Number Reflections(Observed) 74593
    Percent Possible(Observed) 95.0
    R Merge I(Observed) 0.07
    Redundancy 2.5
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method OTHER
    reflnsShellList 2.0
    Resolution(Low) 20.0
    Number of Reflections(Observed) 70778
    Number of Reflections(R-Free) 3756
    Percent Reflections(Observed) 100.0
    R-Factor(Observed) 0.193
    R-Work 0.191
    R-Free 0.233
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 32.96
    Anisotropic B[1][1] 0.03
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 1.51
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -1.54
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.0
    Shell Resolution(Low) 2.05
    Number of Reflections(R-Free) 173
    Number of Reflections(R-Work) 3630
    R-Factor(R-Work) 0.223
    R-Factor(R-Free) 0.273
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 3.381
    r_scbond_it 2.194
    r_mcangle_it 1.331
    r_mcbond_it 0.849
    r_nbd_refined 0.202
    r_gen_planes_refined 0.005
    r_chiral_restr 0.087
    r_dihedral_angle_4_deg 13.468
    r_dihedral_angle_3_deg 13.547
    r_dihedral_angle_2_deg 32.893
    r_dihedral_angle_1_deg 5.745
    r_angle_refined_deg 1.334
    r_bond_refined_d 0.013
    r_nbtor_refined 0.299
    r_xyhbond_nbd_refined 0.132
    r_symmetry_vdw_refined 0.186
    r_symmetry_hbond_refined 0.15
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 8528
    Nucleic Acid Atoms 0
    Heterogen Atoms 64
    Solvent Atoms 654
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) DENZO
    Data Reduction (data scaling) SCALEPACK
    Structure Refinement REFMAC 5.3.0006
     
    Software
    refinement REFMAC version: 5.3.0006