X-RAY DIFFRACTION Experimental Data & Validation


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Crystallization

Crystalization Experiments

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 86.24 α = 90
b = 106.26 β = 90
c = 126.4 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
IMAGE PLATE RIGAKU MIRRORS --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU RUH2R -- -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2 27.4 95.0 0.07 -- -- 2.5 -- 74593 -- 0.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
OTHER 2.0 20.0 -- -- -- 70778 3756 100.0 -- 0.193 0.191 0.233 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.0 2.05 -- 173 3630 0.223 0.273 -- --
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 32.96
Anisotropic B[1][1] 0.03
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 1.51
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -1.54
RMS Deviations
Key Refinement Restraint Deviation
r_scangle_it 3.381
r_scbond_it 2.194
r_mcangle_it 1.331
r_mcbond_it 0.849
r_nbd_refined 0.202
r_gen_planes_refined 0.005
r_chiral_restr 0.087
r_dihedral_angle_4_deg 13.468
r_dihedral_angle_3_deg 13.547
r_dihedral_angle_2_deg 32.893
r_dihedral_angle_1_deg 5.745
r_angle_refined_deg 1.334
r_bond_refined_d 0.013
r_nbtor_refined 0.299
r_xyhbond_nbd_refined 0.132
r_symmetry_vdw_refined 0.186
r_symmetry_hbond_refined 0.15
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 8528
Nucleic Acid Atoms 0
Heterogen Atoms 64
Solvent Atoms 654

Software

Computing
Computing Package Purpose
DENZO Data Reduction (intensity integration)
SCALEPACK Data Reduction (data scaling)
REFMAC 5.3.0006 Structure Refinement
Software
Software Name Purpose
REFMAC version: 5.3.0006 refinement