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X-RAY DIFFRACTION
Materials and Methods page
2JC0
  •   Crystallization Hide
    Crystallization Experiments
    Details 20% PEG4K, 100MM CITRATE BUFFER, PH5.0, 5MM DTT, 10% GLYCEROL
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 85.74 α = 90
    b = 105.89 β = 90
    c = 126.12 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector IMAGE PLATE
    Type RIGAKU
    Details MIRRORS
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source ROTATING ANODE
    Type RIGAKU RUH2R
    Wavelength 1.5418
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2
    Resolution(Low) 27.2
    Number Reflections(Observed) 75239
    Percent Possible(Observed) 96.5
    R Merge I(Observed) 0.14
    Redundancy 2.5
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method OTHER
    reflnsShellList 2.2
    Resolution(Low) 20.0
    Number of Reflections(Observed) 55748
    Number of Reflections(R-Free) 2983
    Percent Reflections(Observed) 100.0
    R-Factor(Observed) 0.184
    R-Work 0.181
    R-Free 0.248
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 32.06
    Anisotropic B[1][1] -0.52
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 1.09
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.57
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.2
    Shell Resolution(Low) 2.26
    Number of Reflections(R-Free) 215
    Number of Reflections(R-Work) 4019
    R-Factor(R-Work) 0.207
    R-Factor(R-Free) 0.285
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 4.052
    r_scbond_it 2.749
    r_mcangle_it 1.736
    r_mcbond_it 1.12
    r_nbd_refined 0.216
    r_gen_planes_refined 0.007
    r_chiral_restr 0.114
    r_dihedral_angle_4_deg 16.352
    r_dihedral_angle_3_deg 15.4
    r_dihedral_angle_2_deg 32.975
    r_dihedral_angle_1_deg 6.354
    r_angle_refined_deg 1.705
    r_bond_refined_d 0.019
    r_nbtor_refined 0.304
    r_xyhbond_nbd_refined 0.166
    r_symmetry_vdw_refined 0.188
    r_symmetry_hbond_refined 0.208
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 8656
    Nucleic Acid Atoms 0
    Heterogen Atoms 128
    Solvent Atoms 639
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) DENZO
    Data Reduction (data scaling) SCALEPACK
    Structure Refinement REFMAC 5.3.0006
     
    Software
    refinement REFMAC version: 5.3.0006