POP-OUT | CLOSE
 
X-RAY DIFFRACTION
Materials and Methods page
2JA5
  •   Crystallization Hide
    Crystallization Experiments
    pH 7
    Details pH 7.00
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 222.21 α = 90
    b = 392.21 β = 90
    c = 284.03 γ = 90
     
    Space Group
    Space Group Name:    C 2 2 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARRESEARCH
    Collection Date 2005-08-21
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SLS BEAMLINE X06SA
    Wavelength 0.9191
    Site SLS
    Beamline X06SA
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 3.8
    Resolution(Low) 50
    Number Reflections(Observed) 120477
    Percent Possible(Observed) 99.0
    R Merge I(Observed) 0.12
    Redundancy 4.6
     
    High Resolution Shell Details
    Resolution(High) 3.8
    Resolution(Low) 3.94
    Percent Possible(All) 96.8
    R Merge I(Observed) 0.45
    Mean I Over Sigma(Observed) 2.1
    Redundancy 3.4
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 3.8
    Resolution(Low) 50.0
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 230113
    Number of Reflections(R-Free) 4590
    Percent Reflections(Observed) 97.4
    R-Factor(Observed) 0.2701
    R-Work 0.2701
    R-Free 0.2796
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Anisotropic B[1][1] 16.625
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 25.533
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -42.157
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.8
    Shell Resolution(Low) 3.83
    Number of Reflections(R-Free) 76
    Number of Reflections(R-Work) 3809
    R-Factor(R-Work) 0.3762
    R-Factor(R-Free) 0.3595
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    c_bond_d 0.01
    c_angle_deg 1.55
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 31220
    Nucleic Acid Atoms 431
    Heterogen Atoms 9
    Solvent Atoms 0
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) DENZO
    Data Reduction (data scaling) SCALEPACK
    Structure Solution CNS
    Structure Refinement CNS 1.1
     
    Software
    refinement CNS version: 1.1
    model building CNS