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X-RAY DIFFRACTION
Materials and Methods page
2J9M
  •   Crystallization Hide
    Crystallization Experiments
    pH 7.8
    Details pH 7.8
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 52.94 α = 90
    b = 69.93 β = 90
    c = 71.69 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type BRUKER
    Details MIRRORS
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source ROTATING ANODE
    Type MACSCIENCE
    Wavelength 1.5418
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2.5
    Resolution(Low) 71.69
    Number Reflections(Observed) 138956
    Percent Possible(Observed) 99.9
    R Merge I(Observed) 0.04
    Redundancy 14.31
     
    High Resolution Shell Details
    Resolution(High) 2.5
    Resolution(Low) 2.6
    Percent Possible(All) 99.6
    R Merge I(Observed) 0.19
    Mean I Over Sigma(Observed) 5.35
    Redundancy 11.97
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.5
    Resolution(Low) 50.0
    Number of Reflections(Observed) 8682
    Number of Reflections(R-Free) 943
    Percent Reflections(Observed) 99.8
    R-Factor(Observed) 0.219
    R-Work 0.21
    R-Free 0.294
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 19.62
    Anisotropic B[1][1] 0.33
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.75
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -1.08
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5
    Shell Resolution(Low) 2.57
    Number of Reflections(R-Free) 59
    Number of Reflections(R-Work) 638
    R-Factor(R-Work) 0.224
    R-Factor(R-Free) 0.3
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 3.766
    r_scbond_it 2.679
    r_mcangle_it 1.859
    r_mcbond_it 1.044
    r_nbd_refined 0.215
    r_gen_planes_refined 0.005
    r_chiral_restr 0.092
    r_dihedral_angle_4_deg 19.566
    r_dihedral_angle_3_deg 18.725
    r_dihedral_angle_2_deg 43.692
    r_dihedral_angle_1_deg 6.023
    r_angle_refined_deg 1.413
    r_bond_refined_d 0.012
    r_nbtor_refined 0.318
    r_xyhbond_nbd_refined 0.154
    r_symmetry_vdw_refined 0.281
    r_symmetry_hbond_refined 0.262
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2219
    Nucleic Acid Atoms 0
    Heterogen Atoms 22
    Solvent Atoms 16
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) SAINT
    Data Reduction (data scaling) SADABS
    Structure Solution AMORE
    Structure Refinement REFMAC 5.2.0019
     
    Software
    refinement REFMAC version: 5.2.0019
    model building AMORE