An Information Portal to 110790 Biological Macromolecular Structures

Materials and Methods page
  •   NMR Eperiment Details Hide
    Representative Model Choice Rationale
    minimized average structure  
    Spectrometer Info
    Field Strength 800.0
    Manufacturer Varian
    Model INOVA
    Field Strength 600.0
    Manufacturer Varian
    Model INOVA
    Sample Conditions
    IDs solution ID:1 condition ID:1
    Sample Contents 1mM polymerase mu BRCT domain, 25 mM d-Tris, 50 mM KCl, 0.02% NaN3, 5 mM DTT, pH 7.9, 90% H2O, 10% D2O
    Solvent System 90% H2O, 10% D2O
    Ionic Strength 50 mM KCl
    pH 7.9
    Pressure ambient
    Temperature 283
  •   NMR Refinement Information Hide
    Method Torsion angle dynamics followed by molecular dynamics refinement in explicit water solvent
    Details The initial structures were computed using the auto noeassign feature of CYANA 2.1; 1503 NOE distance restraints were assigned, and 147 dihedral angle restraints were used in the calculation. The 20 best CYANA structures were refined in explicit solvent using ARIA 2.0a with the 1506 NOE distance restraints, 147 dihedral angle restraints, 42 H-bond restraints, and 48 residual dipolar coupling restraints.
  •   NMR Ensemble Information Hide
    Conformer Selection Criteria structures with the lowest energy
    Conformers Calculated Total Number 100
    Conformers Submitted Total Number 11
  •   NMR Experimental Information Hide
    IDs experiment ID:1 solution ID:1 conditons ID:1
    Type 3D_13C-separated_NOESY
    IDs experiment ID:2 solution ID:1 conditons ID:1
    Type 3D_15N-separated_NOESY
  •   Software and Computing Hide
    NMR Software
    Authors Habeck, Rieping, Linge, and Nilges
    Classification refinement
    Software Name ARIA 2.0a
    Authors Guentert, Mumenthaler, Herrmann, and Wuthrich
    Classification structure solution
    Software Name CYANA 2.1
    Authors Johnson and Blevins
    Classification processing
    Software Name NMRView 5.0.4
    Authors Delaglio, Grzesiek, Vuister, Zhu, Pfeifer, and Bax
    Classification processing
    Software Name NMRPipe 2003, 2004
    Authors Varian
    Classification collection
    Software Name VNMR 1.1C, VNMRJ 1.1C