POP-OUT | CLOSE

An Information Portal to 105025 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
2GS7
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION
    pH 8.5
    Temperature 293.0
    Details 20% PEG3350, 0.2 M NaI, 100 mM Bis-Tris Propane, pH 8.5, VAPOR DIFFUSION, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 64.6 α = 90
    b = 85.25 β = 96.36
    c = 78.33 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 4
    Collection Date 2006-04-12
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ALS BEAMLINE 8.3.1
    Wavelength List 1.1159
    Site ALS
    Beamline 8.3.1
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2.6
    Resolution(Low) 50
    Number Reflections(All) 24965
    Number Reflections(Observed) 24965
    Percent Possible(Observed) 94.9
    Redundancy 3.1
     
    High Resolution Shell Details
    Resolution(High) 2.6
    Resolution(Low) 2.7
    Percent Possible(All) 80.1
    Mean I Over Sigma(Observed) 3.3
    R-Sym I(Observed) 0.328
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.6
    Resolution(Low) 50.0
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 23414
    Number of Reflections(Observed) 23414
    Number of Reflections(R-Free) 1673
    Percent Reflections(Observed) 89.6
    R-Factor(All) 0.258
    R-Factor(Observed) 0.258
    R-Work 0.233
    R-Free 0.298
    R-Free Selection Details random
     
    Temperature Factor Modeling
    Mean Isotropic B Value 42.902
    Anisotropic B[1][1] -12.454
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -25.291
    Anisotropic B[2][2] 18.571
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -6.117
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    c_angle_deg 1.372
    c_bond_d 0.007
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 4505
    Nucleic Acid Atoms 0
    Heterogen Atoms 75
    Solvent Atoms 169
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) BLU-ICE
    Data Reduction (data scaling) HKL-2000
    Structure Solution PHASER
    Structure Refinement CNS
     
    Software
    data extraction pdb_extract version: 2.000
    refinement CNS