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X-RAY DIFFRACTION
Materials and Methods page
2FVJ
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 8.5
    Temperature 293.0
    Details 20% PEG3350, 0.2M magnesium chloride, 0.1M Tris, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 53.48 α = 90
    b = 65.9 β = 90
    c = 87.54 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARRESEARCH
    Collection Date 2004-07-30
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SLS BEAMLINE X06SA
    Wavelength List 0.7997
    Site SLS
    Beamline X06SA
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 1.99
    Resolution(Low) 30
    Number Reflections(All) 21716
    Number Reflections(Observed) 21716
    Percent Possible(Observed) 99.6
     
    High Resolution Shell Details
    Resolution(High) 2.0
    Resolution(Low) 2.07
    Percent Possible(All) 97.4
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method FOURIER SYNTHESIS
    reflnsShellList 1.99
    Resolution(Low) 30.0
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 21575
    Number of Reflections(Observed) 21575
    Number of Reflections(R-Free) 1105
    Percent Reflections(Observed) 99.6
    R-Factor(All) 0.19225
    R-Factor(Observed) 0.19225
    R-Work 0.18942
    R-Free 0.24586
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 35.317
    Anisotropic B[1][1] -0.11
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 1.84
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -1.73
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.994
    Shell Resolution(Low) 2.046
    Number of Reflections(R-Free) 68
    Number of Reflections(R-Work) 1405
    R-Factor(R-Work) 0.201
    R-Factor(R-Free) 0.259
    Percent Reflections(Observed) 95.03
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 4.18
    r_scbond_it 2.709
    r_mcangle_it 1.78
    r_mcbond_it 1.096
    r_symmetry_hbond_refined 0.29
    r_bond_refined_d 0.015
    r_angle_refined_deg 1.582
    r_dihedral_angle_1_deg 5.444
    r_dihedral_angle_2_deg 37.59
    r_dihedral_angle_3_deg 16.511
    r_dihedral_angle_4_deg 17.156
    r_chiral_restr 0.125
    r_gen_planes_refined 0.007
    r_nbd_refined 0.221
    r_nbtor_refined 0.31
    r_xyhbond_nbd_refined 0.193
    r_symmetry_vdw_refined 0.227
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2149
    Nucleic Acid Atoms 0
    Heterogen Atoms 46
    Solvent Atoms 253
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) DENZO
    Data Reduction (data scaling) SCALEPACK
    Structure Refinement REFMAC 5.2.0005
     
    Software
    refinement REFMAC version: 5.2.0005