POP-OUT | CLOSE
 
X-RAY DIFFRACTION
Materials and Methods page
2F9S
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6.8
    Temperature 293.0
    Details 100mM Tris HCl; 2.2M Ammonium Sulfate; 2mM L-Cysteine, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 61.19 α = 90
    b = 61.19 β = 90
    c = 167 γ = 120
     
    Space Group
    Space Group Name:    P 65
     
     
  •   Diffraction Hide
    Diffraction Detector
    Detector CCD
    Type SBC
    Collection Date 2003-11-11
     
    Diffraction Radiation
    Monochromator Si
    Diffraction Protocol MAD
    Monochromator Si
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 19-BM
    Wavelength List 0.9807, 0.9808, 0.9537
    Site APS
    Beamline 19-BM
    Source SYNCHROTRON
    Type APS BEAMLINE 19-BM
    Wavelength List 0.9641
    Site APS
    Beamline 19-BM
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 1.0
    Resolution(High) 1.4
    Resolution(Low) 52.7
    Number Reflections(All) 69296
    Number Reflections(Observed) 69296
    Percent Possible(Observed) 0.986
    Redundancy 5.2
     
    High Resolution Shell Details
    Resolution(High) 1.401
    Resolution(Low) 1.45
    Percent Possible(All) 0.959
    Mean I Over Sigma(Observed) 1.5
    R-Sym I(Observed) 0.353
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MAD
    reflnsShellList 1.401
    Resolution(Low) 52.7
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 69087
    Number of Reflections(Observed) 65610
    Number of Reflections(R-Free) 3477
    Percent Reflections(Observed) 99.88
    R-Factor(All) 0.16273
    R-Factor(Observed) 0.16273
    R-Work 0.16207
    R-Free 0.17529
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 13.087
    Anisotropic B[1][1] 0.36
    Anisotropic B[1][2] 0.18
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.36
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.54
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.401
    Shell Resolution(Low) 1.437
    Number of Reflections(R-Free) 238
    Number of Reflections(R-Work) 4839
    R-Factor(R-Work) 0.192
    R-Factor(R-Free) 0.185
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 2.722
    r_scbond_it 1.825
    r_mcangle_it 1.847
    r_mcbond_it 1.102
    r_symmetry_hbond_refined 0.245
    r_symmetry_vdw_other 0.338
    r_symmetry_vdw_refined 0.384
    r_bond_refined_d 0.012
    r_bond_other_d 0.002
    r_angle_refined_deg 1.747
    r_angle_other_deg 1.241
    r_dihedral_angle_1_deg 8.246
    r_chiral_restr 0.122
    r_gen_planes_refined 0.007
    r_gen_planes_other 0.004
    r_nbd_refined 0.29
    r_nbd_other 0.24
    r_nbtor_other 0.113
    r_xyhbond_nbd_refined 0.207
     
    Coordinate Error
    Luzzati Sigma A(Observed) 0.17
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2161
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 171
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) SCALEPACK
    Structure Solution SOLVE
    Structure Refinement REFMAC 5.1.24
     
    Software
    refinement REFMAC version: 5.1.24
    model building SOLVE
    data reduction SCALEPACK
    data collection HKL-2000