X-RAY DIFFRACTION Experimental Data & Validation


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Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 403.32 α = 90
b = 403.32 β = 90
c = 176.68 γ = 90
Symmetry
Space Group P 41 21 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
-- -- -- 2002-06-01
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE ID29 0.991 ESRF ID29

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.8 30 97.4 0.161 -- -- -- 140000 138452 0.0 0.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
3.8 3.93 96.2 0.68 -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 3.8 30.0 -- 0.0 138452 131434 6940 97.25 0.26179 0.26179 0.25902 0.31456 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.8 3.901 -- 505 9234 0.298 0.346 -- --
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 84.895
Anisotropic B[1][1] 0.03
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 0.03
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -0.05
RMS Deviations
Key Refinement Restraint Deviation
r_scangle_it 1.905
r_scbond_it 1.109
r_mcangle_it 2.944
r_mcbond_it 1.618
r_nbd_refined 0.292
r_gen_planes_refined 0.008
r_chiral_restr 0.101
r_dihedral_angle_1_deg 12.841
r_angle_refined_deg 1.635
r_bond_refined_d 0.019
r_xyhbond_nbd_refined 0.243
r_metal_ion_refined 0.313
r_symmetry_vdw_refined 0.215
r_symmetry_hbond_refined 0.243
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 19076
Nucleic Acid Atoms 32471
Heterogen Atoms 181
Solvent Atoms 0

Software

Computing
Computing Package Purpose
REFMAC 5.1.24 Structure Refinement
Software
Software Name Purpose
REFMAC version: 5.1.24 refinement