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X-RAY DIFFRACTION
Materials and Methods page
2CVU
  •   Crystallization Hide
    Crystallization Experiments
    Method EVAPORATION
    pH 6.5
    Temperature 298.0
    Details PEG 3350, sodium acetate, ammonium sulfate, pH 6.5, EVAPORATION, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 107.76 α = 90
    b = 117.51 β = 90
    c = 64.58 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector IMAGE PLATE
    Type RIGAKU RAXIS IV
    Collection Date 2005-03-29
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source ROTATING ANODE
    Type RIGAKU RUH3R
    Wavelength List 1.5418
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 2.9
    Resolution(Low) 50
    Number Reflections(All) 18752
    Number Reflections(Observed) 18752
    Percent Possible(Observed) 99.7
    R Merge I(Observed) 0.127
    Redundancy 4.6
     
    High Resolution Shell Details
    Resolution(High) 2.9
    Resolution(Low) 3.0
    Percent Possible(All) 100.0
    R Merge I(Observed) 0.408
    Mean I Over Sigma(Observed) 2.1
    R-Sym I(Observed) 0.408
    Redundancy 4.7
    Number Unique Reflections(All) 2553
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.9
    Resolution(Low) 50.0
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 16829
    Number of Reflections(R-Free) 1901
    Percent Reflections(Observed) 99.58
    R-Factor(Observed) 0.18331
    R-Work 0.17728
    R-Free 0.23595
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 37.403
    Anisotropic B[1][1] -1.5
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -2.13
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 3.63
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.9
    Shell Resolution(Low) 2.975
    Number of Reflections(R-Free) 139
    Number of Reflections(R-Work) 1213
    R-Factor(R-Work) 0.222
    R-Factor(R-Free) 0.274
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 2.466
    r_scbond_it 1.501
    r_mcangle_it 1.25
    r_mcbond_it 0.705
    r_nbd_refined 0.236
    r_gen_planes_refined 0.005
    r_chiral_restr 0.109
    r_dihedral_angle_4_deg 19.698
    r_dihedral_angle_3_deg 20.339
    r_dihedral_angle_2_deg 36.786
    r_dihedral_angle_1_deg 6.862
    r_angle_refined_deg 1.591
    r_bond_refined_d 0.013
    r_nbtor_refined 0.319
    r_xyhbond_nbd_refined 0.165
    r_metal_ion_refined 0.044
    r_symmetry_vdw_refined 0.211
    r_symmetry_hbond_refined 0.073
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 5208
    Nucleic Acid Atoms 0
    Heterogen Atoms 57
    Solvent Atoms 133
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) SCALEPACK
    Structure Solution CNS
    Structure Refinement REFMAC 5.2.0007
     
    Software
    refinement REFMAC version: 5.2.0007