X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 7
Details 20% AMMONIUM SULPHATE, 1M KCL, 40MM HEPES PH 7

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 191.99 α = 90
b = 191.99 β = 90
c = 205.88 γ = 120
Symmetry
Space Group P 62 2 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC TOROIDAL MIRROR 2003-11-20
Diffraction Radiation
Monochromator Protocol
DIAMOND (111), GE(220) SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE ID14-2 -- ESRF ID14-2

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.7 30 99.7 0.08 -- -- 5.2 -- 61565 -- 0.0 61.9
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.7 2.8 99.4 0.7 -- 2.4 5.1 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.7 29.93 -- 0.0 -- 61411 1233 -- -- -- 0.233 0.25 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.7 2.87 -- -- -- 0.339 0.403 0.029 99.2
Temperature Factor Modeling
Temperature Factor Value
Isotropic Thermal Model BFACTOR_MODEL
Mean Isotropic B 70.1
Anisotropic B[1][1] 4.46
Anisotropic B[1][2] 11.08
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 4.46
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -8.92
RMS Deviations
Key Refinement Restraint Deviation
c_improper_angle_d 0.85
c_bond_d 0.007
c_angle_deg 1.3
c_dihedral_angle_d 21.0
Coordinate Error
Parameter Value
Luzzati ESD (Observed) 0.4
Luzzati Sigma A (Observed) 0.48
Luzzati Resolution Cutoff (Low) 5.0
Luzzati ESD (R-Free Set) 0.46
Luzzati Sigma A (R-Free Set) 0.56
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 8999
Nucleic Acid Atoms 0
Heterogen Atoms 50
Solvent Atoms 138

Software

Computing
Computing Package Purpose
DENZO Data Reduction (intensity integration)
SCALEPACK Data Reduction (data scaling)
AMORE Structure Solution
CNX 2002 Structure Refinement
Software
Software Name Purpose
CNX version: 2002 refinement
AMORE model building