X-RAY DIFFRACTION Experimental Data & Validation


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Crystallization

Crystalization Experiments
pH 5.6
Details 12-14% PEG 4000, 0.1 M SODIUM CITRATE, PH 5.6, 20% ISOPROPANOL, 5% GLYCEROL

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 144.15 α = 90
b = 146.77 β = 90
c = 143.31 γ = 90
Symmetry
Space Group C 2 2 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
-- -- -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 19-ID -- APS 19-ID

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.02 50 98.5 0.06 -- -- 6.2 -- 97846 -- 0.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.02 40.03 -- -- -- 94830 2980 98.5 -- 0.17 0.169 0.202 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.02 2.07 -- 197 6255 0.208 0.252 -- --
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 38.51
Anisotropic B[1][1] -1.36
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 2.49
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -1.13
RMS Deviations
Key Refinement Restraint Deviation
r_scangle_it 2.836
r_scbond_it 1.884
r_mcangle_it 1.357
r_mcbond_it 0.905
r_nbd_refined 0.192
r_gen_planes_other 0.001
r_gen_planes_refined 0.005
r_chiral_restr 0.082
r_dihedral_angle_4_deg 23.07
r_dihedral_angle_3_deg 14.505
r_dihedral_angle_2_deg 36.033
r_dihedral_angle_1_deg 6.736
r_angle_other_deg 0.779
r_angle_refined_deg 1.411
r_bond_other_d 0.002
r_bond_refined_d 0.013
r_nbd_other 0.197
r_nbtor_refined 0.175
r_nbtor_other 0.084
r_xyhbond_nbd_refined 0.195
r_symmetry_vdw_refined 0.232
r_symmetry_vdw_other 0.275
r_symmetry_hbond_refined 0.214
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 8512
Nucleic Acid Atoms 0
Heterogen Atoms 82
Solvent Atoms 882

Software

Computing
Computing Package Purpose
DENZO Data Reduction (intensity integration)
SCALEPACK Data Reduction (data scaling)
AMORE Structure Solution
REFMAC 5.2.0005 Structure Refinement
Software
Software Name Purpose
REFMAC version: 5.2.0005 refinement
AMORE model building