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X-RAY DIFFRACTION
Materials and Methods page
2BCJ
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 6.5
    Temperature 277.0
    Details 9% PEG8000, 1M NaCl, 0.1M MES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 64.92 α = 90
    b = 129.95 β = 95.81
    c = 122.76 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 4
    Collection Date 2005-04-07
     
    Diffraction Radiation
    Monochromator Si(111)
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ALS BEAMLINE 8.3.1
    Wavelength List 1.116
    Site ALS
    Beamline 8.3.1
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) -2.0
    Resolution(High) 3.06
    Resolution(Low) 46.78
    Number Reflections(All) 37836
    Number Reflections(Observed) 37836
    Percent Possible(Observed) 100.0
    B(Isotropic) From Wilson Plot 75.0
    Redundancy 5.7
     
    High Resolution Shell Details
    Resolution(High) 3.06
    Resolution(Low) 3.21
    Percent Possible(All) 99.9
    Mean I Over Sigma(Observed) 1.1
    R-Sym I(Observed) 0.849
    Number Unique Reflections(All) 3738
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 3.061
    Resolution(Low) 46.78
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 38314
    Number of Reflections(Observed) 37811
    Number of Reflections(R-Free) 1900
    Percent Reflections(Observed) 98.78
    R-Factor(All) 0.236
    R-Factor(Observed) 0.236
    R-Work 0.243
    R-Free 0.292
    R-Free Selection Details Random
     
    Temperature Factor Modeling
    Isotropic Thermal Model isotropic
    Mean Isotropic B Value 99.74
    Anisotropic B[1][1] -0.58
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] -0.36
    Anisotropic B[2][2] 5.78
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -5.27
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.061
    Shell Resolution(Low) 3.141
    Number of Reflections(Observed) 2363
    Number of Reflections(R-Work) 2363
    R-Factor(R-Work) 0.397
    Percent Reflections(Observed) 83.68
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 1.416
    r_nbd_refined 0.186
    r_gen_planes_other 0.001
    r_gen_planes_refined 0.002
    r_chiral_restr 0.053
    r_dihedral_angle_4_deg 15.389
    r_dihedral_angle_3_deg 14.653
    r_dihedral_angle_2_deg 32.926
    r_dihedral_angle_1_deg 5.544
    r_angle_other_deg 0.681
    r_angle_refined_deg 0.917
    r_bond_other_d 0.001
    r_bond_refined_d 0.006
    r_nbd_other 0.155
    r_nbtor_refined 0.172
    r_nbtor_other 0.078
    r_xyhbond_nbd_refined 0.132
    r_metal_ion_refined 0.071
    r_symmetry_vdw_refined 0.106
    r_symmetry_vdw_other 0.126
    r_symmetry_hbond_refined 0.174
    r_mcbond_it 0.71
    r_mcbond_other 0.035
    r_mcangle_it 0.817
    r_scbond_it 0.975
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 10839
    Nucleic Acid Atoms 0
    Heterogen Atoms 34
    Solvent Atoms 5
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) HKL-2000
    Data Reduction (data scaling) SCALEPACK
    Structure Solution PHASER
    Structure Refinement REFMAC 5.2.0005
     
    Software
    data extraction pdb_extract version: 1.700
    refinement REFMAC5 version: 5.2.0005