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X-RAY DIFFRACTION
Materials and Methods page
2A7F
  •   Crystallization Hide
    Crystallization Experiments
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 78.71 α = 90
    b = 78.71 β = 90
    c = 37.21 γ = 90
     
    Space Group
    Space Group Name:    P 43 21 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ELETTRA BEAMLINE 5.2R
    Wavelength 1.50
    Site ELETTRA
    Beamline 5.2R
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 1.85
    Resolution(Low) 40
    Number Reflections(Observed) 10173
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method FOURIER SYNTHESIS
    reflnsShellList 1.85
    Resolution(Low) 40.0
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 10445
    Number of Reflections(Observed) 10173
    Number of Reflections(R-Free) 227
    Percent Reflections(Observed) 99.5
    R-Factor(Observed) 0.168
    R-Work 0.166
    R-Free 0.232
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 17.55
    Anisotropic B[1][1] 0.27
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.27
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.55
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.85
    Shell Resolution(Low) 1.9
    Number of Reflections(R-Free) 18
    Number of Reflections(R-Work) 736
    R-Factor(R-Work) 0.148
    R-Factor(R-Free) 0.232
    Percent Reflections(Observed) 100.0
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 7.27
    r_scbond_it 4.845
    r_mcangle_it 2.2
    r_mcbond_other 0.301
    r_mcbond_it 1.181
    r_nbd_refined 0.253
    r_gen_planes_other 0.001
    r_gen_planes_refined 0.008
    r_chiral_restr 0.121
    r_dihedral_angle_4_deg 18.917
    r_dihedral_angle_3_deg 15.428
    r_dihedral_angle_2_deg 37.136
    r_dihedral_angle_1_deg 6.508
    r_angle_other_deg 1.039
    r_angle_refined_deg 1.745
    r_bond_other_d 0.002
    r_bond_refined_d 0.021
    r_nbd_other 0.195
    r_nbtor_refined 0.175
    r_nbtor_other 0.088
    r_xyhbond_nbd_refined 0.233
    r_metal_ion_refined 0.068
    r_symmetry_vdw_refined 0.18
    r_symmetry_vdw_other 0.297
    r_symmetry_hbond_refined 0.294
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 998
    Nucleic Acid Atoms 0
    Heterogen Atoms 8
    Solvent Atoms 171
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) DENZO
    Data Reduction (data scaling) SCALEPACK
    Structure Refinement REFMAC 5.2.0005
     
    Software
    refinement REFMAC version: 5.2.0005