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X-RAY DIFFRACTION
Materials and Methods page
1ZMY
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 7.5
    Temperature 293.0
    Details NaCl, Hepes, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 132.33 α = 90
    b = 132.33 β = 90
    c = 63.4 γ = 120
     
    Space Group
    Space Group Name:    P 65
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type MARRESEARCH
    Collection Date 2005-04-13
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type EMBL/DESY, HAMBURG BEAMLINE X11
    Wavelength List 0.8300
    Site EMBL/DESY, HAMBURG
    Beamline X11
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 3
    Resolution(Low) 18
    Number Reflections(All) 12811
    Number Reflections(Observed) 12811
    Percent Possible(Observed) 99.5
    R Merge I(Observed) 0.223
    Redundancy 9.75
     
    High Resolution Shell Details
    Resolution(High) 3.0
    Resolution(Low) 3.1
    Percent Possible(All) 100.0
    R Merge I(Observed) 0.713
    Mean I Over Sigma(Observed) 3.3
    Number Unique Reflections(All) 1270
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 3.0
    Resolution(Low) 18.0
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 12811
    Number of Reflections(Observed) 12811
    Number of Reflections(R-Free) 1041
    R-Factor(All) 0.2061
    R-Factor(Observed) 0.2061
    R-Work 0.206
    R-Free 0.254
    R-Free Selection Details random
     
    Temperature Factor Modeling
    Data Not Available
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    c_angle_deg 1.54387
    c_bond_d 0.007378
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2925
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 50
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) DENZO
    Data Reduction (data scaling) SCALEPACK
    Structure Solution PHASER
    Structure Refinement CNS 1.0
     
    Software
    refinement CNS version: 1.0
    model building PHASER
    data reduction SCALEPACK
    data collection DENZO