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X-RAY DIFFRACTION
Materials and Methods page
1YL1
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 4.6
    Temperature 298.0
    Details sodium chloride, sodium acetate bufferbuffer, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 79.29 α = 90
    b = 79.29 β = 90
    c = 37.96 γ = 90
     
    Space Group
    Space Group Name:    P 43 21 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 298
     
    Diffraction Detector
    Detector IMAGE PLATE
    Type MAR scanner 345 mm plate
    Collection Date 2004-05-09
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source ROTATING ANODE
    Type RIGAKU
    Wavelength List 1.5418
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 1.9
    Resolution(Low) 19.23
    Number Reflections(All) 9987
    Number Reflections(Observed) 9987
    R Merge I(Observed) 0.081
    B(Isotropic) From Wilson Plot 23.3
    Redundancy 1.0
     
    High Resolution Shell Details
    Resolution(High) 1.9
    Resolution(Low) 1.97
    R Merge I(Observed) 0.116
    Redundancy 1.0
    Number Unique Reflections(All) 9481
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.9
    Resolution(Low) 19.23
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 6373
    Number of Reflections(Observed) 6014
    Number of Reflections(R-Free) 359
    R-Work 0.207
    R-Free 0.251
    R-Free Selection Details Random
     
    Temperature Factor Modeling
    Data Not Available
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.9
    Shell Resolution(Low) 1.97
    Number of Reflections(Observed) 74205
    Number of Reflections(R-Free) 359
    R-Factor(R-Work) 0.207
    R-Factor(R-Free) 0.251
    R-Free Error 0.013
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    c_improper_angle_d 0.96
    c_dihedral_angle_d 22.5
    c_angle_deg 1.2
     
    Coordinate Error
    Luzzati ESD(Observed) 0.23
    Luzzati Sigma A(Observed) 0.14
    Luzzati Resolution Cutoff(Low) 5.0
    Luzzati ESD(R-Free Set) 0.29
    Luzzati Sigma A(R-Free Set) 0.23
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1001
    Nucleic Acid Atoms 0
    Heterogen Atoms 13
    Solvent Atoms 54
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) DENZO
    Data Reduction (data scaling) SCALEPACK
    Structure Solution CNS 1.1
    Structure Refinement CNS 1.1
     
    Software
    refinement CNS version: 1.1
    model building CNS version: 1.1
    data reduction SCALEPACK
    data collection DENZO