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An Information Portal to 105339 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
1YDD
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 42.7 α = 90
    b = 41.7 β = 104.6
    c = 73 γ = 90
     
    Space Group
    Space Group Name:    P 1 21 1
     
     
  •   Diffraction Hide
     
  •   Refinement Hide
    Refinement Statistics
    reflnsShellList 2.1
    Resolution(Low) 6.5
    Cut-off Sigma(I) 2.0
    Number of Reflections(Observed) 9724
    R-Factor(Observed) 0.187
     
    Temperature Factor Modeling
    Data Not Available
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    p_orthonormal_tor 26.8
    p_staggered_tor 17.2
    p_planar_tor 15.6
    p_xhyhbond_nbd 0.26
    p_multtor_nbd 0.246
    p_bond_d 0.013
    p_angle_d 0.026
    p_planar_d 0.031
    p_mcbond_it 0.376
    p_mcangle_it 0.666
    p_scbond_it 0.289
    p_scangle_it 0.517
    p_plane_restr 0.01
    p_chiral_restr 0.096
    p_singtor_nbd 0.185
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2042
    Nucleic Acid Atoms 0
    Heterogen Atoms 15
    Solvent Atoms 101
     
     
  •   Software and Computing Hide
    Computing
    Structure Refinement PROLSQ
     
    Software
    refinement PROLSQ