X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 6
Temperature 298.0
Details ammonium sulfate, MES, calcium chloride, benzamidinium hydrochloride, pH 6.00, VAPOR DIFFUSION, HANGING DROP, temperature 298K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 63.17 α = 90
b = 69.17 β = 90
c = 63.97 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 293
Diffraction Detector
Detector Diffraction Type Details Collection Date
IMAGE PLATE RIGAKU RAXIS IV OSMICS MIRRORS 2002-07-10
Diffraction Radiation
Monochromator Protocol
none SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU 1.5418 -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.6 47 98.8 0.037 0.037 -- 2.59 37652 37652 0.0 0.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.6 1.66 98.8 0.433 0.433 1.1 3.79 34788

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.6 10.0 0.0 0.0 34788 31330 3458 100.0 0.162 0.1602 0.1602 0.193 RANDOM
RMS Deviations
Key Refinement Restraint Deviation
s_approx_iso_adps 0.0
s_similar_adp_cmpnt 0.062
s_rigid_bond_adp_cmpnt 0.0
s_anti_bump_dis_restr 0.041
s_non_zero_chiral_vol 0.061
s_zero_chiral_vol 0.055
s_from_restr_planes 0.029
s_similar_dist 0.0
s_angle_d 0.027
s_bond_d 0.01
Coordinate Error
Parameter Value
Number Disordered Residues 11.0
Occupancy Sum Hydrogen 1581.0
Occupancy Sum Non Hydrogen 1777.0
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 1622
Nucleic Acid Atoms 0
Heterogen Atoms 35
Solvent Atoms 120

Software

Computing
Computing Package Purpose
R-AXIS Data Reduction (intensity integration)
CRYSTALCLEAR (MSC/RIGAKU) Data Reduction (data scaling)
CNS Structure Solution
SHELXL-97 Structure Refinement
Software
Software Name Purpose
SHELXL-97 refinement
CNS model building
CRYSTAL version: CLEAR data reduction
R-AXIS data collection