X-RAY DIFFRACTION Experimental Data & Validation


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Crystallization

Crystalization Experiments
pH 6.6
Details pH 6.60

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 102.35 α = 90
b = 102.35 β = 90
c = 168 γ = 120
Symmetry
Space Group P 61 2 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
IMAGE PLATE (RAXIS 4) RIGAKU -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU RU300 -- -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.55 39 99.6 0.11 -- -- 3.2 -- 16609 -- 0.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.55 2.69 99.0 0.46 -- 1.6 -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.55 39.2 -- -- -- 16609 890 99.4 -- 0.219 0.216 0.288 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.55 2.62 -- 60 1175 0.289 0.338 -- --
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 46.79
Anisotropic B[1][1] -0.94
Anisotropic B[1][2] -0.47
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -0.94
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 1.41
RMS Deviations
Key Refinement Restraint Deviation
r_scangle_it 5.464
r_scbond_it 3.762
r_mcangle_it 4.666
r_mcbond_it 3.131
r_nbd_refined 0.219
r_gen_planes_other 0.003
r_gen_planes_refined 0.006
r_chiral_restr 0.089
r_dihedral_angle_1_deg 8.274
r_angle_other_deg 0.906
r_angle_refined_deg 1.681
r_bond_other_d 0.002
r_bond_refined_d 0.017
r_nbd_other 0.241
r_nbtor_other 0.087
r_xyhbond_nbd_refined 0.217
r_symmetry_vdw_refined 0.302
r_symmetry_vdw_other 0.25
r_symmetry_hbond_refined 0.366
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2946
Nucleic Acid Atoms 0
Heterogen Atoms 43
Solvent Atoms 140

Software

Computing
Computing Package Purpose
MOSFLM Data Reduction (intensity integration)
CCP4 (SCALA) Data Reduction (data scaling)
AMORE Structure Solution
REFMAC 5.1.29 Structure Refinement
Software
Software Name Purpose
REFMAC version: 5.1.29 refinement
AMORE model building