POP-OUT | CLOSE

An Information Portal to 105212 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
1UYL
  •   Crystallization Hide
    Crystallization Experiments
    pH 6.5
    Details 25% PEG MME 2000, 0.1M NA CACODYLATE, PH6.5, 0.2M MGCL2., pH 6.50
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 65.13 α = 90
    b = 88.77 β = 90
    c = 99.94 γ = 90
     
    Space Group
    Space Group Name:    I 2 2 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC
    Collection Date 2002-03-15
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ESRF BEAMLINE ID14-2
    Wavelength 0.933
    Site ESRF
    Beamline ID14-2
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 1.4
    Resolution(Low) 30
    Number Reflections(Observed) 57228
    Percent Possible(Observed) 94.2
    R Merge I(Observed) 0.087
    Redundancy 2.0
     
    High Resolution Shell Details
    Resolution(High) 1.42
    Resolution(Low) 1.45
    Percent Possible(All) 82.2
    R Merge I(Observed) 0.517
    Mean I Over Sigma(Observed) 1.5
    Redundancy 1.0
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.4
    Resolution(Low) 65.94
    Number of Reflections(Observed) 51156
    Number of Reflections(R-Free) 2725
    Percent Reflections(Observed) 94.1
    R-Factor(Observed) 0.2
    R-Work 0.199
    R-Free 0.227
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 17.86
    Anisotropic B[1][1] -0.19
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 1.17
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.98
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.4
    Shell Resolution(Low) 1.44
    Number of Reflections(R-Free) 173
    Number of Reflections(R-Work) 3142
    R-Factor(R-Work) 0.302
    R-Factor(R-Free) 0.344
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 4.562
    r_scbond_it 2.845
    r_mcangle_it 2.019
    r_mcbond_it 1.094
    r_nbd_refined 0.311
    r_gen_planes_other 0.003
    r_gen_planes_refined 0.007
    r_chiral_restr 0.111
    r_dihedral_angle_3_deg 14.117
    r_dihedral_angle_1_deg 4.889
    r_angle_other_deg 0.881
    r_angle_refined_deg 1.794
    r_bond_other_d 0.001
    r_bond_refined_d 0.018
    r_nbd_other 0.269
    r_nbtor_other 1.142
    r_xyhbond_nbd_refined 0.204
    r_symmetry_vdw_refined 0.362
    r_symmetry_vdw_other 0.342
    r_symmetry_hbond_refined 0.575
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1627
    Nucleic Acid Atoms 0
    Heterogen Atoms 0
    Solvent Atoms 287
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) DENZO
    Data Reduction (data scaling) SCALEPACK
    Structure Solution MOLREP
    Structure Refinement REFMAC 5.0
     
    Software
    refinement REFMAC version: 5.0
    model building MOLREP