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X-RAY DIFFRACTION
Materials and Methods page
1UY8
  •   Crystallization Hide
    Crystallization Experiments
    pH 6.5
    Details 25% PEG MME 2000, 0.1M NA CACODYLATE, PH6.5, 0.2M MGCL2., pH 6.50
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 66.45 α = 90
    b = 90.1 β = 90
    c = 97.84 γ = 90
     
    Space Group
    Space Group Name:    I 2 2 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC
    Collection Date 2003-03-15
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ESRF BEAMLINE ID29
    Wavelength 0.933
    Site ESRF
    Beamline ID29
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2
    Resolution(Low) 30
    Number Reflections(Observed) 20980
    Percent Possible(Observed) 97.6
    R Merge I(Observed) 0.049
    Redundancy 4.9
     
    High Resolution Shell Details
    Resolution(High) 2.0
    Resolution(Low) 2.1
    Percent Possible(All) 78.7
    R Merge I(Observed) 0.093
    Mean I Over Sigma(Observed) 12.6
    Redundancy 4.4
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.98
    Resolution(Low) 65.94
    Number of Reflections(Observed) 19411
    Number of Reflections(R-Free) 1054
    Percent Reflections(Observed) 98.1
    R-Factor(Observed) 0.174
    R-Work 0.172
    R-Free 0.204
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 30.64
    Anisotropic B[1][1] -1.63
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.93
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.7
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.98
    Shell Resolution(Low) 2.03
    Number of Reflections(R-Free) 64
    Number of Reflections(R-Work) 1159
    R-Factor(R-Work) 0.192
    R-Factor(R-Free) 0.295
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 6.044
    r_scbond_it 3.517
    r_mcangle_it 2.157
    r_mcbond_it 1.138
    r_nbd_refined 0.223
    r_gen_planes_refined 0.008
    r_chiral_restr 0.132
    r_dihedral_angle_1_deg 6.678
    r_angle_refined_deg 1.742
    r_bond_refined_d 0.021
    r_xyhbond_nbd_refined 0.19
    r_symmetry_vdw_refined 0.221
    r_symmetry_hbond_refined 0.213
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 1627
    Nucleic Acid Atoms 0
    Heterogen Atoms 23
    Solvent Atoms 253
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) DENZO
    Data Reduction (data scaling) SCALEPACK
    Structure Solution MOLREP
    Structure Refinement REFMAC 5.1.19
     
    Software
    refinement REFMAC version: 5.1.19
    model building MOLREP