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X-RAY DIFFRACTION
Materials and Methods page
1T2D
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 7.5
    Temperature 291.0
    Details MPD, Hepes, Imidazole, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 80.51 α = 90
    b = 86.58 β = 90
    c = 90.34 γ = 90
     
    Space Group
    Space Group Name:    I 2 2 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 4
    Collection Date 2001-01-01
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type EMBL/DESY, HAMBURG BEAMLINE X11
    Wavelength List 0.9091
    Site EMBL/DESY, HAMBURG
    Beamline X11
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 2.0
    Observed Criterion Sigma(I) 2.0
    Resolution(High) 1.1
    Resolution(Low) 30
    Number Reflections(All) 127550
    Number Reflections(Observed) 127177
    Percent Possible(Observed) 99.7
    Redundancy 5.6
     
    High Resolution Shell Details
    Resolution(High) 1.1
    Resolution(Low) 1.12
    Percent Possible(All) 95.6
    Mean I Over Sigma(Observed) 2.1
    R-Sym I(Observed) 0.473
    Number Unique Reflections(All) 6036
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.1
    Resolution(Low) 29.49
    Cut-off Sigma(I) 0.0
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 122251
    Number of Reflections(Observed) 116082
    Number of Reflections(R-Free) 6169
    Percent Reflections(Observed) 95.9
    R-Factor(All) 0.14324
    R-Factor(Observed) 0.14324
    R-Work 0.14279
    R-Free 0.15169
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 6.56
    Anisotropic B[1][1] 0.0
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.0
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 0.0
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.1
    Shell Resolution(Low) 1.129
    Number of Reflections(Observed) 8024
    Number of Reflections(R-Free) 407
    Number of Reflections(R-Work) 7617
    R-Factor(R-Work) 0.222
    R-Factor(R-Free) 0.228
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_sphericity_bonded 1.043
    r_sphericity_free 1.61
    r_rigid_bond_restr 0.655
    r_scangle_it 2.225
    r_scbond_it 1.384
    r_mcangle_it 0.982
    r_mcbond_it 0.559
    r_symmetry_hbond_refined 0.107
    r_symmetry_vdw_other 0.314
    r_symmetry_vdw_refined 0.23
    r_bond_refined_d 0.007
    r_bond_other_d 0.002
    r_angle_refined_deg 1.287
    r_angle_other_deg 1.305
    r_dihedral_angle_1_deg 5.238
    r_chiral_restr 0.105
    r_gen_planes_refined 0.004
    r_gen_planes_other 0.002
    r_nbd_refined 0.214
    r_nbd_other 0.238
    r_nbtor_other 0.084
    r_xyhbond_nbd_refined 0.087
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2383
    Nucleic Acid Atoms 0
    Heterogen Atoms 56
    Solvent Atoms 295
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) DENZO
    Data Reduction (data scaling) SCALEPACK
    Structure Solution AMORE
    Structure Refinement REFMAC 5.1.24
     
    Software
    refinement REFMAC version: 5.1.24