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An Information Portal to 105097 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
1SJD
  •   Crystallization Hide
    Crystallization Experiments
    Method batch
    pH 8
    Temperature 298.0
    Details PEG 8000, HEPES, MgCl2, n-succinylphenylglycine, pH 8.0, batch, temperature 298K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 215.2 α = 90
    b = 215.2 β = 90
    c = 257.6 γ = 120
     
    Space Group
    Space Group Name:    H 3 2
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Collection Date 2001-04-07
     
    Diffraction Radiation
    Diffraction Protocol single wavelength
     
    Diffraction Source
    Source SYNCHROTRON
    Type APS BEAMLINE 19-ID
    Wavelength List 0.6525
    Site APS
    Beamline 19-ID
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma (F) 0.0
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 1.87
    Resolution(Low) 50
    Number Reflections(All) 186822
    Number Reflections(Observed) 186822
    Percent Possible(Observed) 99.7
    Redundancy 10.1
     
    High Resolution Shell Details
    Resolution(High) 1.87
    Resolution(Low) 1.94
    Percent Possible(All) 99.2
    Mean I Over Sigma(Observed) 3.3
    R-Sym I(Observed) 0.377
    Redundancy 5.2
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method FOURIER SYNTHESIS
    reflnsShellList 1.87
    Resolution(Low) 50.0
    Cut-off Sigma(F) 0.0
    Number of Reflections(all) 186821
    Number of Reflections(Observed) 186821
    Number of Reflections(R-Free) 18681
    Percent Reflections(Observed) 99.7
    R-Factor(Observed) 0.202
    R-Work 0.196
    R-Free 0.241
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Data Not Available
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    t_angle_deg 2.3
    t_bond_d 0.012
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 11067
    Nucleic Acid Atoms 0
    Heterogen Atoms 108
    Solvent Atoms 1162
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) D*TREK
    Data Reduction (data scaling) HKL-2000
    Structure Solution TNT
    Structure Refinement TNT
     
    Software
    refinement TNT
    model building TNT
    data reduction HKL2000
    data collection d*TREK