X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Batch
pH 8
Temperature 298.0
Details PEG 8000, HEPES, MgCl2, n-succinylphenylglycine, pH 8.0, batch, temperature 298K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 215.2 α = 90
b = 215.2 β = 90
c = 257.6 γ = 120
Symmetry
Space Group H 3 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD -- -- 2001-04-07
Diffraction Radiation
Monochromator Protocol
-- single wavelength
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 19-ID 0.6525 APS 19-ID

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.87 50 99.7 -- 0.085 -- 10.1 186822 186822 0.0 0.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.87 1.94 99.2 -- 0.377 3.3 5.2 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
FOURIER SYNTHESIS 1.87 50.0 -- 0.0 186821 186821 18681 99.7 -- 0.202 0.196 0.241 RANDOM
RMS Deviations
Key Refinement Restraint Deviation
t_angle_deg 2.3
t_bond_d 0.012
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 11067
Nucleic Acid Atoms 0
Heterogen Atoms 108
Solvent Atoms 1162

Software

Computing
Computing Package Purpose
D*TREK Data Reduction (intensity integration)
HKL-2000 Data Reduction (data scaling)
TNT Structure Solution
TNT Structure Refinement
Software
Software Name Purpose
TNT refinement
TNT model building
HKL2000 data reduction
d*TREK data collection