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An Information Portal to 105339 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
1RT3
  •   Crystallization Hide
    Crystallization Experiments
    pH 5
    Details pH 5.0
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 138.9 α = 90
    b = 114.4 β = 90
    c = 65.6 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector IMAGE PLATE
    Type FUJI
    Collection Date 1995-05
     
    Diffraction Radiation
     
    Diffraction Source
    Source SYNCHROTRON
    Type PHOTON FACTORY BEAMLINE BL-6A
    Wavelength 1.0
    Site PHOTON FACTORY
    Beamline BL-6A
     
     
  •   Refinement Data Hide
    Reflection Details
    Observed Criterion Sigma(I) 0.0
    Resolution(High) 3
    Resolution(Low) 25
    Number Reflections(Observed) 17935
    Percent Possible(Observed) 83.3
    R Merge I(Observed) 0.132
    Redundancy 2.36
     
    High Resolution Shell Details
    Resolution(High) 3.0
    Resolution(Low) 3.11
    Percent Possible(All) 64.2
    R Merge I(Observed) 0.531
    Mean I Over Sigma(Observed) 1.29
    Redundancy 1.71
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 3.0
    Resolution(Low) 25.0
    Number of Reflections(Observed) 17935
    Number of Reflections(R-Free) 897
    Percent Reflections(Observed) 83.3
    R-Factor(Observed) 0.264
    R-Work 0.264
    R-Free 0.335
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 52.5
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 3.0
    Shell Resolution(Low) 3.14
    Number of Reflections(R-Free) 94
    Number of Reflections(R-Work) 1627
    R-Factor(R-Work) 0.416
    R-Factor(R-Free) 0.423
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    x_scangle_it 6.0
    x_scbond_it 3.0
    x_mcangle_it 4.0
    x_mcbond_it 2.0
    x_improper_angle_d 1.1
    x_bond_d 0.005
    x_angle_deg 1.2
    x_dihedral_angle_d 24.0
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 7577
    Nucleic Acid Atoms 0
    Heterogen Atoms 22
    Solvent Atoms 0
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) DENZO
    Data Reduction (data scaling) SCALEPACK
    Structure Solution X-PLOR 3.1
    Structure Refinement X-PLOR 3.1
     
    Software
    refinement X-PLOR version: 3.1
    model building X-PLOR version: 3.1