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SOLUTION NMR
Materials and Methods page
1R2P
  •   NMR Eperiment Details Hide
    Representative Model Choice Rationale
    lowest energy  
     
    Spectrometer Info
    Field Strength 750.0
    Manufacturer Bruker
    Model DMX
    Field Strength 500.0
    Manufacturer Bruker
    Model DMX
    Field Strength 600.0
    Manufacturer Bruker
    Model AVANCE
     
    Sample Conditions
    IDs solution ID:1 condition ID:1
    Sample Contents 0.5 - 0.7 mM D5 RNA; 0 - 200mM KCl, 0 - 20 mM MgCl2, 0.01 mM EDTA, 90% H2O, 10% D2O
    Solvent System 90% H2O, 10% D2O
    Ionic Strength 100mM KCl
    pH 6.5
    Temperature 278
    IDs solution ID:1 condition ID:2
    Sample Contents 0.5 - 0.7 mM D5 RNA; 0 - 200mM KCl, 0 - 20 mM MgCl2, 0.01 mM EDTA, 90% H2O, 10% D2O
    Solvent System 90% H2O, 10% D2O
    Ionic Strength 100mM KCl
    pH 6.5
    Temperature 298
    IDs solution ID:1 condition ID:3
    Sample Contents 0.5 - 0.7 mM D5 RNA; 0 - 200mM KCl, 0 - 20 mM MgCl2, 0.01 mM EDTA, 90% H2O, 10% D2O
    Solvent System 90% H2O, 10% D2O
    Ionic Strength 100mM KCl
    pH 6.5
    Temperature 308
    IDs solution ID:1 condition ID:4
    Sample Contents 0.5 - 0.7 mM D5 RNA; 0 - 200mM KCl, 0 - 20 mM MgCl2, 0.01 mM EDTA, 90% H2O, 10% D2O
    Solvent System 90% H2O, 10% D2O
    Ionic Strength 100mM KCl
    pH 6.5
    Temperature 291
    IDs solution ID:1 condition ID:5
    Sample Contents 0.5 - 0.7 mM D5 RNA; 0 - 200mM KCl, 0 - 20 mM MgCl2, 0.01 mM EDTA, 90% H2O, 10% D2O
    Solvent System 90% H2O, 10% D2O
    Ionic Strength 100mM KCl
    pH 6.5
    Temperature 303
    IDs solution ID:2 condition ID:1
    Sample Contents 0.5 - 0.7 mM D5 RNA; 0 - 200mM KCl, 0 - 20 mM MgCl2, 0.01 mM EDTA, 99.999% D2O
    Solvent System 99.999% D2O
    Ionic Strength 100mM KCl
    pH 6.5
    Temperature 278
    IDs solution ID:2 condition ID:2
    Sample Contents 0.5 - 0.7 mM D5 RNA; 0 - 200mM KCl, 0 - 20 mM MgCl2, 0.01 mM EDTA, 99.999% D2O
    Solvent System 99.999% D2O
    Ionic Strength 100mM KCl
    pH 6.5
    Temperature 298
    IDs solution ID:2 condition ID:3
    Sample Contents 0.5 - 0.7 mM D5 RNA; 0 - 200mM KCl, 0 - 20 mM MgCl2, 0.01 mM EDTA, 99.999% D2O
    Solvent System 99.999% D2O
    Ionic Strength 100mM KCl
    pH 6.5
    Temperature 308
    IDs solution ID:2 condition ID:4
    Sample Contents 0.5 - 0.7 mM D5 RNA; 0 - 200mM KCl, 0 - 20 mM MgCl2, 0.01 mM EDTA, 99.999% D2O
    Solvent System 99.999% D2O
    Ionic Strength 100mM KCl
    pH 6.5
    Temperature 291
    IDs solution ID:2 condition ID:5
    Sample Contents 0.5 - 0.7 mM D5 RNA; 0 - 200mM KCl, 0 - 20 mM MgCl2, 0.01 mM EDTA, 99.999% D2O
    Solvent System 99.999% D2O
    Ionic Strength 100mM KCl
    pH 6.5
    Temperature 303
    IDs solution ID:3 condition ID:1
    Sample Contents 0.5 - 0.7 mM D5 RNA, 13C-15N LABELED; 100mM KCl, 0.01 mM EDTA, 90% H2O, 10% D2O
    Solvent System 90% H2O, 10% D2O
    Ionic Strength 100mM KCl
    pH 6.5
    Temperature 278
    IDs solution ID:3 condition ID:2
    Sample Contents 0.5 - 0.7 mM D5 RNA, 13C-15N LABELED; 100mM KCl, 0.01 mM EDTA, 90% H2O, 10% D2O
    Solvent System 90% H2O, 10% D2O
    Ionic Strength 100mM KCl
    pH 6.5
    Temperature 298
    IDs solution ID:3 condition ID:3
    Sample Contents 0.5 - 0.7 mM D5 RNA, 13C-15N LABELED; 100mM KCl, 0.01 mM EDTA, 90% H2O, 10% D2O
    Solvent System 90% H2O, 10% D2O
    Ionic Strength 100mM KCl
    pH 6.5
    Temperature 308
    IDs solution ID:3 condition ID:4
    Sample Contents 0.5 - 0.7 mM D5 RNA, 13C-15N LABELED; 100mM KCl, 0.01 mM EDTA, 90% H2O, 10% D2O
    Solvent System 90% H2O, 10% D2O
    Ionic Strength 100mM KCl
    pH 6.5
    Temperature 291
    IDs solution ID:3 condition ID:5
    Sample Contents 0.5 - 0.7 mM D5 RNA, 13C-15N LABELED; 100mM KCl, 0.01 mM EDTA, 90% H2O, 10% D2O
    Solvent System 90% H2O, 10% D2O
    Ionic Strength 100mM KCl
    pH 6.5
    Temperature 303
    IDs solution ID:4 condition ID:1
    Sample Contents 0.5 - 0.7 mM D5 RNA, 13C-15N LABELED; 100mM KCl, 0.01 mM EDTA, 99.999% D2O
    Solvent System 99.999% D2O
    Ionic Strength 100mM KCl
    pH 6.5
    Temperature 278
    IDs solution ID:4 condition ID:2
    Sample Contents 0.5 - 0.7 mM D5 RNA, 13C-15N LABELED; 100mM KCl, 0.01 mM EDTA, 99.999% D2O
    Solvent System 99.999% D2O
    Ionic Strength 100mM KCl
    pH 6.5
    Temperature 298
    IDs solution ID:4 condition ID:3
    Sample Contents 0.5 - 0.7 mM D5 RNA, 13C-15N LABELED; 100mM KCl, 0.01 mM EDTA, 99.999% D2O
    Solvent System 99.999% D2O
    Ionic Strength 100mM KCl
    pH 6.5
    Temperature 308
    IDs solution ID:4 condition ID:4
    Sample Contents 0.5 - 0.7 mM D5 RNA, 13C-15N LABELED; 100mM KCl, 0.01 mM EDTA, 99.999% D2O
    Solvent System 99.999% D2O
    Ionic Strength 100mM KCl
    pH 6.5
    Temperature 291
    IDs solution ID:4 condition ID:5
    Sample Contents 0.5 - 0.7 mM D5 RNA, 13C-15N LABELED; 100mM KCl, 0.01 mM EDTA, 99.999% D2O
    Solvent System 99.999% D2O
    Ionic Strength 100mM KCl
    pH 6.5
    Temperature 303
    IDs solution ID:5 condition ID:1
    Sample Contents 0.5 - 0.7 mM D5 RNA, 13C-15N LABELED; 100mM KCl, 0.01 mM EDTA, 17 mg/mL Pf1 FILAMENTOUS BACTERIOPHAGE, 90% H2O, 10% D2O
    Solvent System 90% H2O, 10% D2O
    Ionic Strength 100mM KCl
    pH 6.5
    Temperature 278
    IDs solution ID:5 condition ID:2
    Sample Contents 0.5 - 0.7 mM D5 RNA, 13C-15N LABELED; 100mM KCl, 0.01 mM EDTA, 17 mg/mL Pf1 FILAMENTOUS BACTERIOPHAGE, 90% H2O, 10% D2O
    Solvent System 90% H2O, 10% D2O
    Ionic Strength 100mM KCl
    pH 6.5
    Temperature 298
    IDs solution ID:5 condition ID:3
    Sample Contents 0.5 - 0.7 mM D5 RNA, 13C-15N LABELED; 100mM KCl, 0.01 mM EDTA, 17 mg/mL Pf1 FILAMENTOUS BACTERIOPHAGE, 90% H2O, 10% D2O
    Solvent System 90% H2O, 10% D2O
    Ionic Strength 100mM KCl
    pH 6.5
    Temperature 308
    IDs solution ID:5 condition ID:4
    Sample Contents 0.5 - 0.7 mM D5 RNA, 13C-15N LABELED; 100mM KCl, 0.01 mM EDTA, 17 mg/mL Pf1 FILAMENTOUS BACTERIOPHAGE, 90% H2O, 10% D2O
    Solvent System 90% H2O, 10% D2O
    Ionic Strength 100mM KCl
    pH 6.5
    Temperature 291
    IDs solution ID:5 condition ID:5
    Sample Contents 0.5 - 0.7 mM D5 RNA, 13C-15N LABELED; 100mM KCl, 0.01 mM EDTA, 17 mg/mL Pf1 FILAMENTOUS BACTERIOPHAGE, 90% H2O, 10% D2O
    Solvent System 90% H2O, 10% D2O
    Ionic Strength 100mM KCl
    pH 6.5
    Temperature 303
     
     
  •   NMR Refinement Information Hide
    Refinement
    Method TORSION ANGLE MOLECULAR DYNAMICS CARTESIAN SPACE SIMULATED ANNEALING AND MOLECULAR DYNAMICS RESIDUAL DIPOLAR COUPLINGS
    Details STRUCTURES BASED ON 678 NOE-DERIVED DISTANCE RESTRAINTS, 261 DIHEDRAL RESTRAINTS, 72 HYDROGEN BOND RESTRAINTS, AND 24 RESIDUAL DIPOLAR COUPLING RESTRAINTS
     
  •   NMR Ensemble Information Hide
    Ensemble
    Conformer Selection Criteria structures with the lowest energy
    Conformers Calculated Total Number 100
    Conformers Submitted Total Number 10
     
  •   NMR Experimental Information Hide
    Experiment
    IDs experiment ID:1 solution ID:1 conditons ID:1
    Type 2D NOESY
    IDs experiment ID:2 solution ID:2 conditons ID:3
    Type 2D NOESY
    IDs experiment ID:3 solution ID:2 conditons ID:4
    Type 2D NOESY
    IDs experiment ID:4 solution ID:4 conditons ID:2
    Type 3D_13C-separated_NOESY
    IDs experiment ID:5 solution ID:4 conditons ID:2
    Type 2D 1H-13C HSQC
    IDs experiment ID:6 solution ID:2 conditons ID:2
    Type 2D 1H-1H TOCSY
    IDs experiment ID:7 solution ID:4 conditons ID:2
    Type 3D 1H-13C-1H HCCH TOCSY
    IDs experiment ID:8 solution ID:4 conditons ID:2
    Type 3D 1H-13C-1H HCCH COSY
    IDs experiment ID:9 solution ID:3 conditons ID:2
    Type 2D 2JHN HNN-COSY
     
  •   Additional NMR Experimental Information Hide
    Details
    Detail RESIDUAL DIPOLAR COUPLINGS WERE MEASURED USING 1H-13C HSQC COUPLED IN EITHER THE PROTON OR THE CARBON DIMENSION
     
  •   Software and Computing Hide
    NMR Software
    Authors Brunger et. al.
    Classification refinement
    Software Name CNS 1.1
    Authors Bruker
    Classification processing
    Software Name XWINNMR 2.6
    Authors Goddard and Kneller
    Classification data analysis
    Software Name SPARKY 3
    Authors Guntert, Mumenthaler, Wuthrich
    Classification data analysis
    Software Name DYANA
    Authors Brunger et. al.
    Classification structure solution
    Software Name CNS 1.1