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139555
Biological Macromolecular Structures Enabling Breakthroughs in Research and Education
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Structure Summary
3D View
Annotations
Sequence
Sequence Similarity
Structure Similarity
Experiment
1Q2Q
Enterobacter cloacae GC1 class C beta-lactamase complexed with penem WAY185229
Display Files
FASTA Sequence
PDB File
PDB File (Header)
mmCIF File
mmCIF File (Header)
PDBML/XML File
PDBML/XML File (Header)
Download Files
FASTA Sequence
PDB File (Text)
PDB File (gz)
PDBx/mmCIF File
PDBx/mmCIF File (gz)
PDBML/XML File
PDBML/XML File (gz)
Structure Factor (Text)
Structure Factor (gz)
Biological Assembly (gz) (A)
X-RAY DIFFRACTION Experimental Data & Validation
X-ray Experimental Help
Crystallization
Crystalization Experiments
Method
Vapor Diffusion Sitting Drop
pH
7
Temperature
296.0
Details
PEG 8000, HEPES, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 296K
Crystal Data
Unit Cell
Length (Å)
Angle (°)
a = 76.22
α = 90
b = 69.05
β = 90
c = 62.15
γ = 90
Symmetry
Space Group
P 21 21 2
Diffraction
Diffraction Experiment
ID #
Data Collection Temperature
1
100
Diffraction Detector
Detector
Diffraction Type
Details
Collection Date
CCD
ADSC QUANTUM 210
--
2002-06-24
Diffraction Radiation
Monochromator
Protocol
--
SINGLE WAVELENGTH
Diffraction Detector Source
Source
Type
Wavelength List
Synchrotron Site
Beamline
SYNCHROTRON
CHESS BEAMLINE A1
0.9474
CHESS
A1
Data Collection
Overall
Resolution (High)
Resolution (Low)
Percent Possible (Observed)
R Merge I (Observed)
R Sym I (Observed)
Net I Over Average Sigma (I)
Redundancy
Number Reflections (All)
Number Reflections (Observed)
Observed Criterion Sigma (F)
Observed Criterion Sigma (I)
B (Isotropic) From Wilson Plot
1.4
50
96.7
--
0.126
--
4.3
62479
62479
--
0.0
--
High Resolution Shell
Resolution (High)
Resolution (Low)
Percent Possible (All)
R Merge I (Observed)
R-Sym I (Observed)
Mean I Over Sigma (Observed)
Redundancy
Number Unique Reflections (All)
1.4
1.45
79.6
--
0.409
2.4
2.3
5063
Refinement
Statistics
Structure Solution Method
Refinement High Resolution
Refinement Low Resolution
Cut-off Sigma (I)
Cut-off Sigma (F)
Number of Reflections (All)
Number of Reflections (Observed)
Number of Reflections (R-Free)
Percent Reflections (Observed)
R-Factor (All)
R-Factor (Observed)
R-Work
R-Free
R-Free Selection Details
MOLECULAR REPLACEMENT
1.4
20.0
--
0.0
62428
62428
1861
96.4
0.145
0.145
0.144
0.209
RANDOM
Temperature Factor Modeling
Temperature Factor
Value
Mean Isotropic B
15.4
RMS Deviations
Key
Refinement Restraint Deviation
s_anti_bump_dis_restr
0.016
s_bond_d
0.009
s_similar_adp_cmpnt
0.049
s_approx_iso_adps
0.085
s_similar_dist
0.0
s_non_zero_chiral_vol
0.066
s_angle_d
0.026
s_from_restr_planes
0.0285
s_zero_chiral_vol
0.065
s_rigid_bond_adp_cmpnt
0.003
Coordinate Error
Parameter
Value
Luzzati ESD (Observed)
0.08
Number Disordered Residues
19.0
Occupancy Sum Hydrogen
2673.0
Occupancy Sum Non Hydrogen
3246.14
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms
Numbers
Protein Atoms
2753
Nucleic Acid Atoms
0
Heterogen Atoms
29
Solvent Atoms
452
Software
Software
Software Name
Purpose
DENZO
data reduction
SCALEPACK
data scaling
CNS
refinement
SHELXL-97
refinement
CNS
phasing