X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 5.8
Temperature 290.0
Details methanol,calcium chloride,mes,sodium fusidate, pH 5.8, VAPOR DIFFUSION, HANGING DROP, temperature 290.0K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 115.35 α = 90
b = 129.2 β = 108.3
c = 118.07 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MARRESEARCH BENT MIRROR 2002-09-28
Diffraction Radiation
Monochromator Protocol
TRIANGULAR MONOCHROMATOR SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 0.811 EMBL/DESY, Hamburg X11

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.18 6.7 97.9 0.059 0.059 -- 3.5 182115 182115 2.0 2.0 32.34
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.18 2.23 99.4 0.286 0.234 3.6 3.3 25486

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.18 111.8 -- -- -- 161964 8603 99.74 -- 0.19512 0.1915 0.26324 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.18 2.237 25486 564 11831 0.257 0.333 -- --
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 33.344
Anisotropic B[1][1] 5.28
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 2.04
Anisotropic B[2][2] -2.11
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -1.89
RMS Deviations
Key Refinement Restraint Deviation
r_dihedral_angle_1_deg 8.022
r_xyhbond_nbd_refined 0.185
r_scangle_it 5.714
r_scbond_it 4.125
r_angle_refined_deg 2.963
r_symmetry_hbond_refined 0.188
r_bond_refined_d 0.036
r_symmetry_vdw_refined 0.221
r_nbd_refined 0.254
r_mcangle_it 2.542
r_gen_planes_refined 0.01
r_mcbond_it 1.495
r_chiral_restr 0.364
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 21253
Nucleic Acid Atoms 0
Heterogen Atoms 445
Solvent Atoms 582

Software

Software
Software Name Purpose
REFMAC refinement version: 5.1.24
MOSFLM data reduction
CCP4 data scaling version: (SCALA)
AMoRE phasing