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X-RAY DIFFRACTION
Materials and Methods page
1PXN
  •   Crystallization Hide
    Crystallization Experiments
    Method VAPOR DIFFUSION, HANGING DROP
    pH 7.8
    Temperature 277.0
    Details PEG 6000, NA-HEPES, pH 7.8, VAPOR DIFFUSION, HANGING DROP, temperature 277K
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 52.9 α = 90
    b = 71.71 β = 90
    c = 70 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC QUANTUM 4
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type SRS BEAMLINE PX14.1
    Wavelength List 1.488
    Site SRS
    Beamline PX14.1
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.5
    Resolution(Low) 25
    Number Reflections(Observed) 9345
    Percent Possible(Observed) 96.4
    R Merge I(Observed) 0.089
    B(Isotropic) From Wilson Plot 27.4
    Redundancy 11.0
     
    High Resolution Shell Details
    Resolution(High) 2.5
    Resolution(Low) 2.66
    Percent Possible(All) 96.7
    R Merge I(Observed) 0.49
    Mean I Over Sigma(Observed) 2.76
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.5
    Resolution(Low) 24.82
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 9163
    Number of Reflections(R-Free) 487
    Percent Reflections(Observed) 94.9
    R-Factor(All) 0.24
    R-Factor(Observed) 0.23
    R-Work 0.23
    R-Free 0.277
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Isotropic Thermal Model RESTRAINED
    Mean Isotropic B Value 49.9
    Anisotropic B[1][1] -4.24
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 13.53
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -9.29
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.5
    Shell Resolution(Low) 2.66
    Number of Reflections(Observed) 1295
    Number of Reflections(R-Free) 75
    Number of Reflections(R-Work) 1295
    R-Factor(R-Work) 0.251
    R-Factor(R-Free) 0.379
    R-Free Error 0.044
    Percent Reflections(Observed) 87.1
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    c_scangle_it 3.17
    c_scbond_it 2.06
    c_mcangle_it 2.86
    c_mcbond_it 1.64
    c_improper_angle_d 1.17
    c_bond_d 0.01
    c_angle_deg 1.5
    c_dihedral_angle_d 23.1
     
    Coordinate Error
    Luzzati ESD(Observed) 0.3
    Luzzati Sigma A(Observed) 0.2
    Luzzati Resolution Cutoff(Low) 5.0
    Luzzati ESD(R-Free Set) 0.41
    Luzzati Sigma A(R-Free Set) 0.36
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2366
    Nucleic Acid Atoms 0
    Heterogen Atoms 22
    Solvent Atoms 53
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) DENZO
    Data Reduction (data scaling) SCALEPACK
    Structure Solution MOLREP
    Structure Refinement CNS 1.0
     
    Software
    refinement CNS version: 1.0