X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 51.24 α = 90
b = 66.95 β = 90
c = 123.96 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
IMAGE PLATE MAC Science DIP-2030B -- 2003-04-01
Diffraction Radiation
Monochromator Protocol
OSMIC CONFOCAL OPTICS SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE ENRAF-NONIUS FR591 -- -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.07 30 98.2 -- -- -- -- 26171 26171 0.0 0.0 --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.07 2.14 96.9 -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.1 30.0 -- 0.0 23912 23912 1275 98.37 0.19098 0.1909 0.18876 0.23191 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.1 2.213 -- 170 3387 0.173 0.22 -- --
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 19.211
Anisotropic B[1][1] -0.2
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 0.29
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -0.08
RMS Deviations
Key Refinement Restraint Deviation
r_scangle_it 1.004
r_chiral_restr 0.07
r_nbtor_other 0.081
r_symmetry_vdw_refined 0.259
r_xyhbond_nbd_refined 0.136
r_dihedral_angle_1_deg 6.634
r_scbond_it 0.67
r_symmetry_vdw_other 0.257
r_nbd_refined 0.187
r_mcbond_it 0.212
r_nbd_other 0.234
r_angle_refined_deg 1.119
r_gen_planes_other 0.002
r_bond_other_d 0.002
r_symmetry_hbond_refined 0.144
r_bond_refined_d 0.007
r_gen_planes_refined 0.003
r_mcangle_it 0.359
r_angle_other_deg 0.75
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3438
Nucleic Acid Atoms 0
Heterogen Atoms 24
Solvent Atoms 225

Software

Software
Software Name Purpose
REFMAC refinement version: 5.1.19
DENZO data reduction
SCALEPACK data scaling
AMoRE phasing