X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 7
Temperature 277.0
Details PEG 2000 MME, HEPES, trans-2-decenoyl-CoA, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 48.64 α = 90
b = 151.29 β = 90.5
c = 81.62 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MAR CCD 165 mm -- 2002-08-09
Diffraction Radiation
Monochromator Protocol
TRIANGULAR MONOCHROMATOR SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X13 0.8019 EMBL/DESY, HAMBURG X13

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.35 35 96.4 0.064 -- -- 3.0 49040 47255 0.0 0.0 30.14
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.35 2.5 90.1 0.232 -- 4.53 2.9 7461

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.35 35.0 0.0 0.0 49040 47255 2363 96.4 -- 0.174 0.171 0.225 random
RMS Deviations
Key Refinement Restraint Deviation
r_bond_refined_d 0.014
r_angle_refined_deg 1.55
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 8426
Nucleic Acid Atoms 0
Heterogen Atoms 196
Solvent Atoms 465

Software

Computing
Computing Package Purpose
DENZO Data Reduction (intensity integration)
XDS Data Reduction (data scaling)
CNS Structure Solution
REFMAC 5.1 Structure Refinement
Software
Software Name Purpose
XDS data reduction
REFMAC version: 5.1 refinement
DENZO data collection
CNS model building