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139717
Biological Macromolecular Structures Enabling Breakthroughs in Research and Education
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Structure Summary
3D View
Annotations
Sequence
Sequence Similarity
Structure Similarity
Experiment
1OQS
Crystal Structure of RV4/RV7 Complex
Display Files
FASTA Sequence
PDB File
PDB File (Header)
mmCIF File
mmCIF File (Header)
PDBML/XML File
PDBML/XML File (Header)
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FASTA Sequence
PDB File (Text)
PDB File (gz)
PDBx/mmCIF File
PDBx/mmCIF File (gz)
PDBML/XML File
PDBML/XML File (gz)
Structure Factor (Text)
Structure Factor (gz)
Biological Assembly 1 (gz) (A+S)
Biological Assembly 2 (gz) (A+S)
Biological Assembly 3 (gz) (A+S)
Biological Assembly 4 (gz) (A+S)
X-RAY DIFFRACTION Experimental Data & Validation
X-ray Experimental Help
Crystal Data
Unit Cell
Length (Å)
Angle (°)
a = 74.92
α = 90
b = 85.12
β = 95.1
c = 78.16
γ = 90
Symmetry
Space Group
P 1 21 1
Diffraction
Diffraction Radiation
Monochromator
Protocol
--
SINGLE WAVELENGTH
Diffraction Detector Source
Source
Type
Wavelength List
Synchrotron Site
Beamline
SYNCHROTRON
EMBL/DESY, HAMBURG BEAMLINE X11
--
EMBL/DESY, Hamburg
X11
Data Collection
Overall
Resolution (High)
Resolution (Low)
Percent Possible (Observed)
R Merge I (Observed)
R Sym I (Observed)
Net I Over Average Sigma (I)
Redundancy
Number Reflections (All)
Number Reflections (Observed)
Observed Criterion Sigma (F)
Observed Criterion Sigma (I)
B (Isotropic) From Wilson Plot
1.9
20
--
--
--
--
--
--
75576
--
0.0
--
Refinement
Statistics
Structure Solution Method
Refinement High Resolution
Refinement Low Resolution
Cut-off Sigma (I)
Cut-off Sigma (F)
Number of Reflections (All)
Number of Reflections (Observed)
Number of Reflections (R-Free)
Percent Reflections (Observed)
R-Factor (All)
R-Factor (Observed)
R-Work
R-Free
R-Free Selection Details
MOLECULAR REPLACEMENT
1.9
20.0
--
0.0
--
74210
1338
100.0
--
0.22293
0.22183
0.28409
RANDOM
High Resolution Shell
Refinement method
Shell Resolution (High)
Shell Resolution (Low)
# of Reflections (Observed)
# of Reflections (R-Free)
# of Reflections (R-Work)
R-Factor (R-Work)
R-Factor (R-Free)
R-Factor (R-Free Error)
Percent Reflections (Observed)
X Ray Diffraction
1.9
1.95
--
91
5008
0.292
0.34
--
--
Temperature Factor Modeling
Temperature Factor
Value
Mean Isotropic B
26.415
Anisotropic B[1][1]
-2.4
Anisotropic B[1][2]
0.0
Anisotropic B[1][3]
-0.34
Anisotropic B[2][2]
3.16
Anisotropic B[2][3]
0.0
Anisotropic B[3][3]
-0.82
RMS Deviations
Key
Refinement Restraint Deviation
r_bond_refined_d
0.034
r_dihedral_angle_1_deg
7.472
r_mcangle_it
2.383
r_symmetry_hbond_refined
0.627
r_mcbond_it
1.652
r_scangle_it
5.405
r_gen_planes_refined
0.016
r_nbd_refined
0.346
r_chiral_restr
0.24
r_xyhbond_nbd_refined
0.261
r_angle_refined_deg
3.182
r_symmetry_vdw_refined
0.537
r_scbond_it
3.967
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms
Numbers
Protein Atoms
7655
Nucleic Acid Atoms
0
Heterogen Atoms
0
Solvent Atoms
357
Software
Software
Software Name
Purpose
REFMAC
refinement version: 5.1.16