X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 74.92 α = 90
b = 85.12 β = 95.1
c = 78.16 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 -- EMBL/DESY, Hamburg X11

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.9 20 -- -- -- -- -- -- 75576 -- 0.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.9 20.0 -- 0.0 -- 74210 1338 100.0 -- 0.22293 0.22183 0.28409 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.9 1.95 -- 91 5008 0.292 0.34 -- --
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 26.415
Anisotropic B[1][1] -2.4
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -0.34
Anisotropic B[2][2] 3.16
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -0.82
RMS Deviations
Key Refinement Restraint Deviation
r_mcangle_it 2.383
r_symmetry_hbond_refined 0.627
r_scbond_it 3.967
r_xyhbond_nbd_refined 0.261
r_scangle_it 5.405
r_chiral_restr 0.24
r_bond_refined_d 0.034
r_angle_refined_deg 3.182
r_symmetry_vdw_refined 0.537
r_nbd_refined 0.346
r_gen_planes_refined 0.016
r_mcbond_it 1.652
r_dihedral_angle_1_deg 7.472
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 7655
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 357

Software

Software
Software Name Purpose
REFMAC refinement version: 5.1.16