X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 4.7
Details PEG 8000, NA ACETATE 0.1M PH 4.7, NACL 0.2M, GLYCEROL 10%

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 76.34 α = 90
b = 97.6 β = 90
c = 141.94 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
-- -- -- 2003-06-15
Diffraction Radiation
Monochromator Protocol
-- MAD
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE BM30A -- ESRF BM30A

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.28 19.85 98.3 0.045 -- -- 5.0 -- 48235 -- -- 33.9
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.28 2.36 98.5 0.136 -- 1.9 2.2 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MAD 2.28 20.0 -- 0.0 -- 48235 4871 98.3 -- 0.216 0.216 0.257 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.28 2.42 -- 731 6613 0.254 0.315 0.012 91.3
Temperature Factor Modeling
Temperature Factor Value
Isotropic Thermal Model RESTRAINED
Mean Isotropic B 39.7
Anisotropic B[1][1] 4.03
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -3.35
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -0.68
RMS Deviations
Key Refinement Restraint Deviation
c_improper_angle_d 0.75
c_mcbond_it 1.38
c_scbond_it 2.15
c_angle_deg 1.3
c_dihedral_angle_d 23.5
c_scangle_it 3.17
c_bond_d 0.006
c_mcangle_it 2.28
Coordinate Error
Parameter Value
Luzzati ESD (Observed) 0.29
Luzzati Sigma A (Observed) 0.24
Luzzati Resolution Cutoff (Low) 5.0
Luzzati ESD (R-Free Set) 0.36
Luzzati Sigma A (R-Free Set) 0.32
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 6672
Nucleic Acid Atoms 0
Heterogen Atoms 8
Solvent Atoms 303

Software

Computing
Computing Package Purpose
MOSFLM Data Reduction (intensity integration)
CCP4 (SCALA) Data Reduction (data scaling)
SOLVE, AUTOSHARP Structure Solution
CNS 1.0 Structure Refinement
Software
Software Name Purpose
AUTOSHARP model building
CNS version: 1.0 refinement
SOLVE model building