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139717
Biological Macromolecular Structures Enabling Breakthroughs in Research and Education
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Structure Summary
3D View
Annotations
Sequence
Sequence Similarity
Structure Similarity
Experiment
1OG2
Structure of human cytochrome P450 CYP2C9
Display Files
FASTA Sequence
PDB File
PDB File (Header)
mmCIF File
mmCIF File (Header)
PDBML/XML File
PDBML/XML File (Header)
Download Files
FASTA Sequence
PDB File (Text)
PDB File (gz)
PDBx/mmCIF File
PDBx/mmCIF File (gz)
PDBML/XML File
PDBML/XML File (gz)
Biological Assembly 1 (gz) (A+S)
Biological Assembly 2 (gz) (A+S)
X-RAY DIFFRACTION Experimental Data & Validation
X-ray Experimental Help
Crystallization
Crystalization Experiments
pH
8.4
Details
pH 8.40
Crystal Data
Unit Cell
Length (Å)
Angle (°)
a = 164.87
α = 90
b = 164.87
β = 90
c = 111.11
γ = 120
Symmetry
Space Group
P 3 2 1
Diffraction
Diffraction Experiment
ID #
Data Collection Temperature
1
100
Diffraction Detector
Detector
Diffraction Type
Details
Collection Date
CCD
ADSC CCD
--
--
Diffraction Radiation
Monochromator
Protocol
--
SINGLE WAVELENGTH
Diffraction Detector Source
Source
Type
Wavelength List
Synchrotron Site
Beamline
SYNCHROTRON
ESRF BEAMLINE ID14-2
--
ESRF
ID14-2
Data Collection
Overall
Resolution (High)
Resolution (Low)
Percent Possible (Observed)
R Merge I (Observed)
R Sym I (Observed)
Net I Over Average Sigma (I)
Redundancy
Number Reflections (All)
Number Reflections (Observed)
Observed Criterion Sigma (F)
Observed Criterion Sigma (I)
B (Isotropic) From Wilson Plot
2.6
50
96.5
0.087
--
--
2.6
--
51912
--
--
--
High Resolution Shell
Resolution (High)
Resolution (Low)
Percent Possible (All)
R Merge I (Observed)
R-Sym I (Observed)
Mean I Over Sigma (Observed)
Redundancy
Number Unique Reflections (All)
2.6
2.74
96.5
0.57
--
1.21
2.0
--
Refinement
Statistics
Structure Solution Method
Refinement High Resolution
Refinement Low Resolution
Cut-off Sigma (I)
Cut-off Sigma (F)
Number of Reflections (All)
Number of Reflections (Observed)
Number of Reflections (R-Free)
Percent Reflections (Observed)
R-Factor (All)
R-Factor (Observed)
R-Work
R-Free
R-Free Selection Details
MOLECULAR REPLACEMENT
2.6
55.9
--
--
--
49246
2628
96.4
--
0.21
0.208
0.259
RANDOM
High Resolution Shell
Refinement method
Shell Resolution (High)
Shell Resolution (Low)
# of Reflections (Observed)
# of Reflections (R-Free)
# of Reflections (R-Work)
R-Factor (R-Work)
R-Factor (R-Free)
R-Factor (R-Free Error)
Percent Reflections (Observed)
X Ray Diffraction
2.6
2.67
--
186
2950
0.364
0.407
--
--
Temperature Factor Modeling
Temperature Factor
Value
Mean Isotropic B
47.75
Anisotropic B[1][1]
0.01
Anisotropic B[1][2]
0.01
Anisotropic B[1][3]
0.0
Anisotropic B[2][2]
0.01
Anisotropic B[2][3]
0.0
Anisotropic B[3][3]
-0.02
RMS Deviations
Key
Refinement Restraint Deviation
r_nbd_refined
0.215
r_symmetry_hbond_refined
0.148
r_symmetry_vdw_refined
0.126
r_scbond_it
3.377
r_scangle_it
5.348
r_angle_refined_deg
1.756
r_nbtor_other
0.088
r_chiral_restr
0.085
r_symmetry_vdw_other
0.186
r_bond_other_d
0.004
r_gen_planes_other
0.009
r_xyhbond_nbd_refined
0.153
r_angle_other_deg
0.891
r_mcbond_it
2.641
r_gen_planes_refined
0.007
r_dihedral_angle_1_deg
6.572
r_nbd_other
0.228
r_mcangle_it
4.236
r_bond_refined_d
0.014
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms
Numbers
Protein Atoms
7386
Nucleic Acid Atoms
0
Heterogen Atoms
86
Solvent Atoms
147
Software
Software
Software Name
Purpose
REFMAC
refinement version: 5.1.24
MOSFLM
data reduction
SCALA
data scaling
AMoRE
phasing