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X-RAY DIFFRACTION
Materials and Methods page
1OG2
  •   Crystallization Hide
    Crystallization Experiments
    pH 8.4
    Details pH 8.40
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 164.87 α = 90
    b = 164.87 β = 90
    c = 111.11 γ = 120
     
    Space Group
    Space Group Name:    P 3 2 1
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC
     
    Diffraction Radiation
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ESRF BEAMLINE ID14-2
    Wavelength 0.9
    Site ESRF
    Beamline ID14-2
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 2.6
    Resolution(Low) 50
    Number Reflections(Observed) 51912
    Percent Possible(Observed) 96.5
    R Merge I(Observed) 0.087
    Redundancy 2.6
     
    High Resolution Shell Details
    Resolution(High) 2.6
    Resolution(Low) 2.74
    Percent Possible(All) 96.5
    R Merge I(Observed) 0.57
    Mean I Over Sigma(Observed) 1.21
    Redundancy 2.0
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 2.6
    Resolution(Low) 55.9
    Number of Reflections(Observed) 49246
    Number of Reflections(R-Free) 2628
    Percent Reflections(Observed) 96.4
    R-Factor(Observed) 0.21
    R-Work 0.208
    R-Free 0.259
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Mean Isotropic B Value 47.75
    Anisotropic B[1][1] 0.01
    Anisotropic B[1][2] 0.01
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] 0.01
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] -0.02
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 2.6
    Shell Resolution(Low) 2.67
    Number of Reflections(R-Free) 186
    Number of Reflections(R-Work) 2950
    R-Factor(R-Work) 0.364
    R-Factor(R-Free) 0.407
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    r_scangle_it 5.348
    r_scbond_it 3.377
    r_mcangle_it 4.236
    r_mcbond_it 2.641
    r_nbd_refined 0.215
    r_gen_planes_other 0.009
    r_gen_planes_refined 0.007
    r_chiral_restr 0.085
    r_dihedral_angle_1_deg 6.572
    r_angle_other_deg 0.891
    r_angle_refined_deg 1.756
    r_bond_other_d 0.004
    r_bond_refined_d 0.014
    r_nbd_other 0.228
    r_nbtor_other 0.088
    r_xyhbond_nbd_refined 0.153
    r_symmetry_vdw_refined 0.126
    r_symmetry_vdw_other 0.186
    r_symmetry_hbond_refined 0.148
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 7386
    Nucleic Acid Atoms 0
    Heterogen Atoms 86
    Solvent Atoms 147
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) CCP4 (SCALA)
    Structure Solution AMORE
    Structure Refinement REFMAC 5.1.24
     
    Software
    refinement REFMAC version: 5.1.24
    model building AMORE