X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 7.8
Details pH 7.80

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 102 α = 90
b = 158.55 β = 93.7
c = 110.62 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 85
Diffraction Detector
Detector Diffraction Type Details Collection Date
-- -- -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE ID13 -- ESRF ID13

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.6 50 88.1 -- 0.094 -- 8.8 -- 53846 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.6 2.69 -- -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.6 20.0 -- -- -- 44963 2386 88.2 -- 0.232 0.229 0.285 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.6 2.67 -- 175 3219 0.249 0.323 -- --
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 38.28
Anisotropic B[1][1] -1.51
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.47
Anisotropic B[2][2] -0.56
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 2.14
RMS Deviations
Key Refinement Restraint Deviation
r_scangle_it 1.888
r_scbond_it 1.129
r_mcangle_it 1.341
r_mcbond_it 0.71
r_nbd_refined 0.29
r_gen_planes_refined 0.004
r_chiral_restr 0.087
r_dihedral_angle_3_deg 19.414
r_dihedral_angle_1_deg 2.502
r_angle_refined_deg 1.368
r_bond_refined_d 0.01
r_xyhbond_nbd_refined 0.246
r_symmetry_vdw_refined 0.332
r_symmetry_hbond_refined 0.659
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 11724
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 250

Software

Computing
Computing Package Purpose
DENZO Data Reduction (intensity integration)
SCALEPACK Data Reduction (data scaling)
AMORE Structure Solution
REFMAC 5.0 Structure Refinement
Software
Software Name Purpose
REFMAC version: 5.0 refinement
AMORE model building