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An Information Portal to 105097 Biological Macromolecular Structures

X-RAY DIFFRACTION
Materials and Methods page
1O6K
  •   Crystallization Hide
    Crystallization Experiments
    pH 7.5
    Details 10 MG/ML PROTEIN 20 PEG 4K, 10% ISOPROPONAL, 5 MM DTT, pH 7.50
     
  •   Crystal Data Hide
    Unit Cell
    Length    (Å) Angle    (°)
    a = 44.91 α = 90
    b = 61 β = 90
    c = 129.41 γ = 90
     
    Space Group
    Space Group Name:    P 21 21 21
     
     
  •   Diffraction Hide
    Diffraction Experiment
    Diffrn ID 1
    Data Collection Temperature 100
     
    Diffraction Detector
    Detector CCD
    Type ADSC
    Collection Date 2002-07-15
     
    Diffraction Radiation
    Monochromator SILICON
    Diffraction Protocol SINGLE WAVELENGTH
     
    Diffraction Source
    Source SYNCHROTRON
    Type ESRF BEAMLINE ID14-4
    Wavelength 1.0
    Site ESRF
    Beamline ID14-4
     
     
  •   Refinement Data Hide
    Reflection Details
    Resolution(High) 1.7
    Resolution(Low) 50
    Number Reflections(Observed) 116971
    Percent Possible(Observed) 82.4
    R Merge I(Observed) 0.078
    B(Isotropic) From Wilson Plot 18.1
    Redundancy 4.2
     
    High Resolution Shell Details
    Resolution(High) 1.7
    Resolution(Low) 1.8
    Percent Possible(All) 63.7
    R Merge I(Observed) 0.186
    Mean I Over Sigma(Observed) 2.3
     
     
  •   Refinement Hide
    Refinement Statistics
    Structure Solution Method MOLECULAR REPLACEMENT
    reflnsShellList 1.7
    Resolution(Low) 36.89
    Cut-off Sigma(F) 0.0
    Number of Reflections(Observed) 30601
    Number of Reflections(R-Free) 1517
    Percent Reflections(Observed) 76.4
    R-Factor(Observed) 0.205
    R-Work 0.205
    R-Free 0.234
    R-Free Selection Details RANDOM
     
    Temperature Factor Modeling
    Isotropic Thermal Model RESTRAINED
    Mean Isotropic B Value 20.6
    Anisotropic B[1][1] -4.04
    Anisotropic B[1][2] 0.0
    Anisotropic B[1][3] 0.0
    Anisotropic B[2][2] -3.02
    Anisotropic B[2][3] 0.0
    Anisotropic B[3][3] 7.0
     
    Resolution Shells
    Refinement method X-RAY DIFFRACTION
    Shell Resolution(High) 1.6
    Shell Resolution(Low) 1.7
    Number of Reflections(R-Work) 4
    R-Factor(R-Work) 0.122
    Percent Reflections(Observed) 0.1
     
    RMS Deviations
    Parameter Type Deviation from Ideal
    c_scangle_it 2.87
    c_scbond_it 1.89
    c_mcangle_it 2.01
    c_mcbond_it 1.27
    c_improper_angle_d 1.44
    c_bond_d 0.012
    c_angle_deg 1.5
    c_dihedral_angle_d 23.6
     
    Coordinate Error
    Luzzati ESD(Observed) 0.21
    Luzzati Sigma A(Observed) 0.14
    Luzzati Resolution Cutoff(Low) 5.0
    Luzzati ESD(R-Free Set) 0.23
    Luzzati Sigma A(R-Free Set) 0.14
     
    Number of Non-Hydrogen Atoms Used in Refinement
    Protein Atoms 2668
    Nucleic Acid Atoms 0
    Heterogen Atoms 33
    Solvent Atoms 281
     
     
  •   Software and Computing Hide
    Computing
    Data Reduction (intensity integration) MOSFLM
    Data Reduction (data scaling) CCP4 (SCALA)
    Structure Solution CNS
    Structure Refinement CNS 1.1
     
    Software
    refinement CNS version: 1.1
    model building CNS