X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 45.38 α = 89.71
b = 61.45 β = 70.24
c = 62.26 γ = 72.56
Symmetry
Space Group P 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 110
Diffraction Detector
Detector Diffraction Type Details Collection Date
IMAGE PLATE MARRESEARCH -- 1999-05-14
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU 1.5418 -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.1 25 91.3 -- 0.041 -- 2.2 32199 32199 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.1 2.17 84.0 -- 0.083 -- 2.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
RIGID-BODY REFINEMENT 2.1 50.0 -- -- 32191 32191 1616 91.52 -- 0.17532 0.17304 0.21718 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.098 2.153 2266 106 2160 0.187 0.274 -- --
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 15.816
Anisotropic B[1][1] -0.41
Anisotropic B[1][2] 0.03
Anisotropic B[1][3] -0.3
Anisotropic B[2][2] 0.62
Anisotropic B[2][3] -0.29
Anisotropic B[3][3] -0.02
RMS Deviations
Key Refinement Restraint Deviation
r_mcbond_it 0.519
r_chiral_restr 0.077
r_bond_refined_d 0.01
r_symmetry_hbond_refined 0.138
r_angle_refined_deg 1.131
r_nbd_refined 0.187
r_symmetry_vdw_refined 0.186
r_mcangle_it 0.991
r_scbond_it 1.559
r_scangle_it 2.61
r_xyhbond_nbd_refined 0.113
r_dihedral_angle_1_deg 6.095
r_gen_planes_refined 0.004
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 4735
Nucleic Acid Atoms 0
Heterogen Atoms 54
Solvent Atoms 292

Software

Software
Software Name Purpose
REFMAC refinement version: 5.1.24
SCALEPACK data scaling