X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 7.3
Temperature 293.0
Details HEPES, ammonium sulfate, PEG8000, pH 7.3, VAPOR DIFFUSION, HANGING DROP, temperature 293K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 121.9 α = 90
b = 121.9 β = 90
c = 45.5 γ = 120
Symmetry
Space Group P 65 2 2

Diffraction

Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 4 -- 2002-03-05
CCD ADSC QUANTUM 4 -- 2002-03-05
Diffraction Radiation
Monochromator Protocol
Si111 or Si311 crystals, LN2 cooled SINGLE WAVELENGTH
channel - cut Si monochromator SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ESRF BEAMLINE ID14-4 0.939 ESRF ID14-4
SYNCHROTRON ESRF BEAMLINE ID29 0.969 ESRF ID29

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.8 15 95.2 -- 0.129 -- 3.4 5264 5009 2.0 2.0 36.8
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.8 2.9 82.5 -- 0.322 2.6 -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.8 15.0 -- 0.0 5009 5009 248 -- 0.252 0.252 0.25 0.298 RANDOM
RMS Deviations
Key Refinement Restraint Deviation
c_bond_d 0.009
c_angle_deg 1.32
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 834
Nucleic Acid Atoms 0
Heterogen Atoms 36
Solvent Atoms 26

Software

Software
Software Name Purpose
ProDC data collection
XDS data reduction
AMoRE phasing
CNS refinement version: 1.0
XDS data scaling