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139555
Biological Macromolecular Structures Enabling Breakthroughs in Research and Education
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Structure Summary
3D View
Annotations
Sequence
Sequence Similarity
Structure Similarity
Experiment
1N93
Crystal Structure of the Borna Disease Virus Nucleoprotein
Display Files
FASTA Sequence
PDB File
PDB File (Header)
mmCIF File
mmCIF File (Header)
PDBML/XML File
PDBML/XML File (Header)
Download Files
FASTA Sequence
PDB File (Text)
PDB File (gz)
PDBx/mmCIF File
PDBx/mmCIF File (gz)
PDBML/XML File
PDBML/XML File (gz)
Structure Factor (Text)
Structure Factor (gz)
Biological Assembly (gz) (A+S)
X-RAY DIFFRACTION Experimental Data & Validation
X-ray Experimental Help
Crystallization
Crystalization Experiments
Method
Vapor Diffusion Sitting Drop
pH
9
Temperature
293.0
Details
PEG 550 MME, NaCl, DTT, pH 9.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Data
Unit Cell
Length (Å)
Angle (°)
a = 100.03
α = 90
b = 100.03
β = 90
c = 103.23
γ = 90
Symmetry
Space Group
I 4
Diffraction
Diffraction Experiment
ID #
Data Collection Temperature
1
100
Diffraction Detector
Detector
Diffraction Type
Details
Collection Date
CCD
MARRESEARCH
--
2002-09-18
Diffraction Radiation
Monochromator
Protocol
--
SINGLE WAVELENGTH
Diffraction Detector Source
Source
Type
Wavelength List
Synchrotron Site
Beamline
SYNCHROTRON
EMBL/DESY, HAMBURG BEAMLINE BW7B
0.8841
EMBL/DESY, Hamburg
BW7B
Data Collection
Overall
Resolution (High)
Resolution (Low)
Percent Possible (Observed)
R Merge I (Observed)
R Sym I (Observed)
Net I Over Average Sigma (I)
Redundancy
Number Reflections (All)
Number Reflections (Observed)
Observed Criterion Sigma (F)
Observed Criterion Sigma (I)
B (Isotropic) From Wilson Plot
1.75
30
98.6
--
0.108
--
4.8
--
50437
0.0
0.0
23.87
High Resolution Shell
Resolution (High)
Resolution (Low)
Percent Possible (All)
R Merge I (Observed)
R-Sym I (Observed)
Mean I Over Sigma (Observed)
Redundancy
Number Unique Reflections (All)
1.75
1.81
86.5
--
0.426
3.0
3.2
4392
Refinement
Statistics
Structure Solution Method
Refinement High Resolution
Refinement Low Resolution
Cut-off Sigma (I)
Cut-off Sigma (F)
Number of Reflections (All)
Number of Reflections (Observed)
Number of Reflections (R-Free)
Percent Reflections (Observed)
R-Factor (All)
R-Factor (Observed)
R-Work
R-Free
R-Free Selection Details
MAD
1.76
29.23
0.0
0.0
--
44306
2366
92.93
--
0.16421
0.16298
0.18715
RANDOM
High Resolution Shell
Refinement method
Shell Resolution (High)
Shell Resolution (Low)
# of Reflections (Observed)
# of Reflections (R-Free)
# of Reflections (R-Work)
R-Factor (R-Work)
R-Factor (R-Free)
R-Factor (R-Free Error)
Percent Reflections (Observed)
X Ray Diffraction
1.76
1.806
2924
157
2924
0.192
0.258
--
--
Temperature Factor Modeling
Temperature Factor
Value
Isotropic Thermal Model
isotropic
Mean Isotropic B
22.531
Anisotropic B[1][1]
0.09
Anisotropic B[1][2]
0.0
Anisotropic B[1][3]
0.0
Anisotropic B[2][2]
0.09
Anisotropic B[2][3]
0.0
Anisotropic B[3][3]
-0.18
RMS Deviations
Key
Refinement Restraint Deviation
r_xyhbond_nbd_refined
0.167
r_scbond_it
2.538
r_gen_planes_other
0.005
r_bond_other_d
0.002
r_dihedral_angle_1_deg
5.431
r_mcangle_it
1.969
r_mcbond_it
1.055
r_angle_other_deg
1.538
r_nbd_refined
0.221
r_bond_refined_d
0.013
r_nbd_other
0.239
r_angle_refined_deg
1.379
r_chiral_restr
0.089
r_nbtor_other
0.104
r_scangle_it
4.304
r_gen_planes_refined
0.006
r_symmetry_vdw_refined
0.192
r_symmetry_vdw_other
0.294
r_symmetry_hbond_refined
0.152
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms
Numbers
Protein Atoms
2586
Nucleic Acid Atoms
0
Heterogen Atoms
0
Solvent Atoms
316
Software
Software
Software Name
Purpose
DENZO
data reduction
SCALEPACK
data scaling
SOLVE
phasing
REFMAC
refinement version: 5.1.19