X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 6
Temperature 100.0
Details pH 6.0, temperature 100K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 42.92 α = 90
b = 105.32 β = 98.19
c = 55.99 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
IMAGE PLATE RIGAKU RAXIS IIC -- --
Diffraction Radiation
Monochromator Protocol
Yale mirrors SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU RU200H 1.5418 -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.2 30 -- -- -- -- -- -- 22969 -- -3.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.2 30.0 -- -3.0 22969 22969 1226 96.66 0.19528 0.19528 0.19195 0.25621 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.2 2.257 -- 78 1367 0.233 0.338 -- --
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 27.999
Anisotropic B[1][1] 0.09
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -0.35
Anisotropic B[2][2] -0.22
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 0.03
RMS Deviations
Key Refinement Restraint Deviation
r_gen_planes_other 0.003
r_angle_refined_deg 2.178
r_nbd_other 0.254
r_xyhbond_nbd_refined 0.151
r_angle_other_deg 1.084
r_scbond_it 4.14
r_nbd_refined 0.239
r_mcangle_it 2.879
r_dihedral_angle_1_deg 6.224
r_symmetry_vdw_refined 0.341
r_symmetry_hbond_refined 0.316
r_bond_refined_d 0.026
r_scangle_it 6.283
r_nbtor_other 0.099
r_chiral_restr 0.136
r_gen_planes_refined 0.009
r_symmetry_vdw_other 0.249
r_bond_other_d 0.002
r_mcbond_it 1.591
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3872
Nucleic Acid Atoms 0
Heterogen Atoms 54
Solvent Atoms 114

Software

Software
Software Name Purpose
DENZO data reduction
SCALEPACK data scaling
AMoRE phasing
REFMAC refinement version: 5.1.24