X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
pH 6
Temperature 100.0
Details pH 6.0, temperature 100K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 42.92 α = 90
b = 105.32 β = 98.19
c = 55.99 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
IMAGE PLATE RIGAKU RAXIS IIC -- --
Diffraction Radiation
Monochromator Protocol
Yale mirrors SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU RU200H 1.5418 -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.2 30 -- -- -- -- -- -- 22969 -- -3.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.2 30.0 -- -3.0 22969 22969 1226 96.66 0.19528 0.19528 0.19195 0.25621 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.2 2.257 -- 78 1367 0.233 0.338 -- --
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 27.999
Anisotropic B[1][1] 0.09
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -0.35
Anisotropic B[2][2] -0.22
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 0.03
RMS Deviations
Key Refinement Restraint Deviation
r_nbtor_other 0.099
r_nbd_other 0.254
r_nbd_refined 0.239
r_gen_planes_other 0.003
r_gen_planes_refined 0.009
r_chiral_restr 0.136
r_dihedral_angle_1_deg 6.224
r_angle_other_deg 1.084
r_angle_refined_deg 2.178
r_bond_other_d 0.002
r_bond_refined_d 0.026
r_xyhbond_nbd_refined 0.151
r_symmetry_vdw_refined 0.341
r_symmetry_vdw_other 0.249
r_symmetry_hbond_refined 0.316
r_mcbond_it 1.591
r_mcangle_it 2.879
r_scbond_it 4.14
r_scangle_it 6.283
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3872
Nucleic Acid Atoms 0
Heterogen Atoms 54
Solvent Atoms 114

Software

Computing
Computing Package Purpose
DENZO Data Reduction (intensity integration)
SCALEPACK Data Reduction (data scaling)
AMORE Structure Solution
REFMAC 5.1.24 Structure Refinement
Software
Software Name Purpose
REFMAC version: 5.1.24 refinement
AMoRE model building
SCALEPACK data reduction
DENZO data collection