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139717
Biological Macromolecular Structures Enabling Breakthroughs in Research and Education
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Structure Summary
3D View
Annotations
Sequence
Sequence Similarity
Structure Similarity
Experiment
1MWQ
Structure of HI0828, a Hypothetical Protein from Haemophilus influenzae with a Putative Active-Site Phosphohistidine
Display Files
FASTA Sequence
PDB File
PDB File (Header)
mmCIF File
mmCIF File (Header)
PDBML/XML File
PDBML/XML File (Header)
Download Files
FASTA Sequence
PDB File (Text)
PDB File (gz)
PDBx/mmCIF File
PDBx/mmCIF File (gz)
PDBML/XML File
PDBML/XML File (gz)
Structure Factor (Text)
Structure Factor (gz)
Biological Assembly 1 (gz) (A+S)
Biological Assembly 2 (gz) (S)
X-RAY DIFFRACTION Experimental Data & Validation
X-ray Experimental Help
Crystallization
Crystalization Experiments
Method
Vapor Diffusion Hanging Drop
pH
5.5
Temperature
295.0
Details
PEG4000, sodium cacodylate, sodium chloride, zinc acetate, dioxane, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Data
Unit Cell
Length (Å)
Angle (°)
a = 42.48
α = 90
b = 63.32
β = 90
c = 75.46
γ = 90
Symmetry
Space Group
P 21 21 21
Diffraction
Diffraction Experiment
ID #
Data Collection Temperature
1
100
Diffraction Detector
Detector
Diffraction Type
Details
Collection Date
CCD
ADSC QUANTUM 210
--
2001-09-23
Diffraction Radiation
Monochromator
Protocol
Si(111)
MAD
Diffraction Detector Source
Source
Type
Wavelength List
Synchrotron Site
Beamline
SYNCHROTRON
APS BEAMLINE 17-ID
0.9793, 0.9795, 0.9664, 0.9832
APS
17-ID
Data Collection
Overall
Resolution (High)
Resolution (Low)
Percent Possible (Observed)
R Merge I (Observed)
R Sym I (Observed)
Net I Over Average Sigma (I)
Redundancy
Number Reflections (All)
Number Reflections (Observed)
Observed Criterion Sigma (F)
Observed Criterion Sigma (I)
B (Isotropic) From Wilson Plot
0.99
19.45
94.2
--
0.063
--
4.76
206507
206417
--
0.0
--
High Resolution Shell
Resolution (High)
Resolution (Low)
Percent Possible (All)
R Merge I (Observed)
R-Sym I (Observed)
Mean I Over Sigma (Observed)
Redundancy
Number Unique Reflections (All)
0.99
1.0
55.7
--
0.3486
2.4
0.87
3599
Refinement
Statistics
Structure Solution Method
Refinement High Resolution
Refinement Low Resolution
Cut-off Sigma (I)
Cut-off Sigma (F)
Number of Reflections (All)
Number of Reflections (Observed)
Number of Reflections (R-Free)
Percent Reflections (Observed)
R-Factor (All)
R-Factor (Observed)
R-Work
R-Free
R-Free Selection Details
MAD
0.99
15.0
--
0.0
107935
107935
5403
95.0
0.1087
0.1087
0.1078
0.1319
RANDOM
RMS Deviations
Key
Refinement Restraint Deviation
s_similar_adp_cmpnt
0.049
s_non_zero_chiral_vol
0.11
s_bond_d
0.014
s_angle_d
0.032
s_anti_bump_dis_restr
0.036
s_similar_dist
0.0
s_rigid_bond_adp_cmpnt
0.006
s_zero_chiral_vol
0.094
s_from_restr_planes
0.0269
s_approx_iso_adps
0.107
Coordinate Error
Parameter
Value
Number Disordered Residues
25.0
Occupancy Sum Hydrogen
1497.0
Occupancy Sum Non Hydrogen
1916.09
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms
Numbers
Protein Atoms
1579
Nucleic Acid Atoms
0
Heterogen Atoms
38
Solvent Atoms
329
Software
Software
Software Name
Purpose
DENZO
data reduction
SCALEPACK
data scaling
XPREP
data reduction
SOLVE
phasing
RESOLVE
model building
CNS
refinement
SHELX
model building
SHELXL-97
refinement
RESOLVE
phasing
CNS
phasing
SHELX
phasing