ELECTRON MICROSCOPY Experimental Data



Virus Particulars
Virus Host Category Virus Host Species Virus Host Growth Cell Virus Type Virus Isolate ICTVDB ID
ALGAE -- -- VIRION -- --
EM Sample
Sample Vitrification Details frozen in liquid propane
Sample Aggregation State PARTICLE
Sample Reconstruction Method SINGLE PARTICLE
Name of Sample PBCV-1 virus capsid
EM Data Acquisition
Date of Experiment --
Temperature (Kelvin) 100.0
Microscope Model FEI/PHILIPS CM200FEG/ST
Detector Type KODAK SO-163 FILM
Minimum Defocus (nm) --
Maximum Defocus (nm) --
Minimum Tilt Angle (degrees) 0.0
Maximum Tilt Angle (degrees) 0.0
Nominal CS --
Imaging Mode BRIGHT FIELD
Electron Dose (electrons per Å**-2) --
Illumination Mode FLOOD BEAM
Nominal Magnification --
Calibrated Magnification --
Source FIELD EMISSION GUN
Acceleration Voltage (kV) 200
Imaging Details --
3D Reconstruction
Software Package(s) OTHER
Reconstruction Method(s) --
EM Image Reconstruction Statistics
Number of Particles --
Other Details used Tim Baker's programs PFT, EM3DR, etc.
Effective Resolution 28.0
EM Map-Model Fitting and Refinement
Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Fitting Software
REAL RIGID BODY FIT rigid body refinement in real space against Lagrangian filtered EM density, using the program SITUS.Each molecule in the icosahedral ASU was refined separately. -- -- --