X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
Temperature 278.0
Details VAPOR DIFFUSION, SITTING DROP, temperature 278.00K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 24.03 α = 90
b = 39.26 β = 90
c = 66.3 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 248
Diffraction Detector
Detector Diffraction Type Details Collection Date
DIFFRACTOMETER RIGAKU AFC-5R -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
-- -- -- -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.25 -- -- -- -- -- -- -- n/a -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
-- 2.25 8.0 -- 2.0 -- 2322 -- 86.0 -- 0.165 -- 0.248 --
RMS Deviations
Key Refinement Restraint Deviation
n_multtor_nbd 0.098
n_singtor_nbd 0.097
n_chiral_restr 0.165
n_plane_restr 0.016
n_phos_bond_angle_d 0.066
n_phos_bond_d 0.024
n_sugar_bond_angle_d 0.046
n_sugar_bond_it 5.287
n_sugar_angle_it 5.938
n_phos_bond_it 5.958
n_phos_angle_it 5.83
n_sugar_bond_d 0.025
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 0
Nucleic Acid Atoms 486
Heterogen Atoms 31
Solvent Atoms 36

Software

Computing
Computing Package Purpose
NUCLSQ Structure Refinement
Software
Software Name Purpose
NUCLSQ refinement