SOLUTION NMR Experimental Data


Experimental Details
Sample Conditions
Sample Contents3.67 millimolar polyamide-DNA complex, 10 millimolar sodium phosphate, pH 7.0, 90% H2O, 10% D2O
Solvent90% H2O, 10% D2O
Ionic Strength10 Millimolar
pH7.0
Pressureambient
Temperature (K)298
Experiment(s):2D NOESY
Spectrometer Information
Manufacturer Model Field Strength
Varian INOVA 600.0
NMR Refinement
Method restrained molecular dynamics/simulated annealing, matrix relaxation/NOE-derived distance restraints.
Details The structure calculations used 548 distance restraints. 508 were NOE-derived, and 40 were for Watson-Crick hydrogen bonds.
NMR Ensemble Information
Conformer Selection Criteria structures with the least restraint violations
Conformers Calculated Total Number 40
Conformers Submitted Total Number 11
Representative Model Choice Rationale
1 fewest violations
Additional NMR Experimental Information
1 This structure was determined using standard 2D homonuclear techniques.
Computation: NMR Software
# Classification Software Name Author
1 refinement SANDER MODULE OF AMBER 6.0 PACKAGE (2000) Kollman, Case, Merz, Cheatham, Simmerling, Darden, Pearlman, Caldwell, Ross, Ferguson, Seibel, Singh, & Weiner
2 structure solution AMBER 6.0 Kollman, Case, Merz, Cheatham, Simmerling, Darden, Pearlman, Caldwell, Ross, Ferguson, Seibel, Singh, & Weiner
3 iterative matrix relaxation MARDIGRAS 3.2 Borgias, & James
4 data analysis NMRView 4.1.2 Johnson, & Blevins
5 processing NMRPipe 1 Delalgio, grzesiek, Vuister, Zhu, Pfeifer, & Bax
6 collection VNMR 6.1 B Varian Associates, Inc.