SOLUTION NMR Experimental Data


Experimental Details
Sample Conditions
Sample Contents3.67 millimolar polyamide-DNA complex, 10 millimolar sodium phosphate, pH 7.0, 90% H2O, 10% D2O
Solvent90% H2O/10% D2O
Ionic Strength10 Millimolar
pH7.0
Pressureambient
Temperature (K)298
Experiment(s):2D NOESY
Spectrometer Information
Manufacturer Model Field Strength
Varian INOVA 600.0
NMR Refinement
Method restrained molecular dynamics/simulated annealing, matrix relaxation/NOE-derived distance restraints.
Details The structure calculations used 548 distance restraints. 508 were NOE-derived, and 40 were for Watson-Crick hydrogen bonds.
NMR Ensemble Information
Conformer Selection Criteria structures with the least restraint violations
Conformers Calculated Total Number 40
Conformers Submitted Total Number 11
Representative Model Choice Rationale
1 fewest violations
Additional NMR Experimental Information
1 This structure was determined using standard 2D homonuclear techniques.
Computation: NMR Software
# Classification Software Name Author
1 collection version: 6.1 B VNMR Varian Associates, Inc.
2 processing version: 1 NMRPipe Delalgio, grzesiek, Vuister, Zhu, Pfeifer, & Bax
3 data analysis version: 4.1.2 NMRView Johnson, & Blevins
4 iterative matrix relaxation version: 3.2 MARDIGRAS Borgias, & James
5 structure solution version: 6.0 AMBER Kollman, Case, Merz, Cheatham, Simmerling, Darden, Pearlman, Caldwell, Ross, Ferguson, Seibel, Singh, & Weiner
6 refinement SANDER MODULE OF AMBER 6.0 PACKAGE (2000) Kollman, Case, Merz, Cheatham, Simmerling, Darden, Pearlman, Caldwell, Ross, Ferguson, Seibel, Singh, & Weiner