X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 84.73 α = 90
b = 84.73 β = 90
c = 123.15 γ = 90
Symmetry
Space Group P 41 21 2

Diffraction

Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 4 -- --
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
-- MAD
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ALS BEAMLINE 5.0.2 1.0000,0.9796,0.9795,0.9686 ALS 5.0.2

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.2 54.23 -- -- -- -- -- -- 21376 -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
-- 2.2 54.23 -- -- -- 21376 1127 95.97 -- 0.27918 0.27691 0.32316 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.2 2.257 -- 47 1032 0.542 0.566 -- --
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 64.2111
Anisotropic B[1][1] 0.01
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 0.01
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -0.03
RMS Deviations
Key Refinement Restraint Deviation
r_scangle_it 12.449
r_nbd_refined 0.349
r_gen_planes_refined 0.022
r_chiral_restr 0.313
r_dihedral_angle_3_deg 21.401
r_dihedral_angle_1_deg 8.117
r_angle_refined_deg 4.597
r_bond_refined_d 0.073
r_xyhbond_nbd_refined 0.261
r_symmetry_vdw_refined 0.386
r_symmetry_hbond_refined 0.225
r_mcbond_it 3.731
r_mcangle_it 6.103
r_scbond_it 8.052
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2303
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 25

Software

Computing
Computing Package Purpose
CCDSYS Data Reduction (intensity integration)
HKL-2000 Data Reduction (data scaling)
SOLVE Structure Solution
REFMAC 5 Structure Refinement
Software
Software Name Purpose
REFMAC version: 5.0 refinement
SOLVE model building
HKL2000 data reduction
CCDSYS data collection